UFO04788.5prime Sequence
1118 bp (1020 high quality bases) assembled on 2009-06-30
> UFO04788.5prime
CAGTCGACATGCTCTTATCCTACCGATGCATCTACTCGGTGCTGCTGTCC
ACCATAGCCAGTATTATGGTGGTACTAAGCTCTGCATCCTCCGGCTCCAT
ACAGCTGCCCACTGTGCGCAAGTGCGGCGGTGGCAGATCTGCGGGAGCAG
CCCACACAATGGCCATGAATTTGGCGGCCTACGGGCTGCTGGAGAATCGG
ATTAGCACTCTGGAAGCACCGCGACAAACGCACTGGACGAAAAAGTTCCT
GGCCAAGCGGGAGGCGACTCCCCATTCGGCGCCGTATGTGGTCAGCATCC
AGATGATGACACCCGATCAGGGACTGGTCCACTACTGTGCCGGCACCATC
ATCAACGAGCACTGGATCCTGACGGCGGCCCACTGCCTCAGCTCACCGCA
GGCGGTGGAGAACTCGGTCATTGTGGCGGGCAGCCACGATATTCACGATC
AGAAGGGCGAGGCGAGCAACATTCAAATGCGACACATCGACTACTACGTG
CGACACGAGCTCTATCTCGGCGGAGTGAATCCCTACGACATCGCGCTAAT
TTACACCAAGGAGCCCCTGGTCTTTGACACCTATGTCCAGCCAGCAACGC
TGCCGGAGCAGGATGCCCAGCCGGAGGGATATGGAACTTTGTACGGCTGG
GGCAATGTCTCGATGACTGCGGTACCCAATTATCCGCACCGCCTGCAGGA
GGCCAACATGCCCATACTGGACATGGAGTTATGCGAACAGATTCTCGCCC
GCTCCGGACTCCCATTGCACGAGACCAATCTGTGCACTGGCCCGCTGACA
GGAGGCGTTAGCATCTGCACCGCCGACTCCGGCGGACCATTGATTCAGCA
GTGCTGCGAGGAGCACTTCGAGCAGCCAACATTGTCATCGGCATTGTGTC
CTGGGGCAGATGCCATGCGGCAGAGACGCGCCCTCGGTCTTTGTCGCGTC
TCCGCCTTCACGGAGTGATCACAAGTCATCAGCACGGCACCCACATTATG
CAGCTTTCTAGACATCGTTGGCCGGCGGGCCCAGGTTAGTGTCATATTCA
TATCTATCATATCATATTCCACTAGCCTAGAGATCTGCCATGACCTAGCT
GATTCACATAAGCGCCGG
UFO04788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7142-RA | 1342 | CG7142-RA | 237..1239 | 8..1000 | 4760 | 98.9 | Plus |
| Phae1-RB | 1248 | CG16996-RB | 838..904 | 773..839 | 185 | 85.1 | Plus |
| Phae1-RA | 904 | CG16996-RA | 636..702 | 773..839 | 185 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18278284..18279286 | 1000..8 | 4560 | 98.6 | Minus |
| 2L | 23513712 | 2L | 12110254..12110320 | 773..839 | 185 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:00:14 has no hits.
UFO04788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:24 Download gff for
UFO04788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7142-RA | 242..1247 | 1..1000 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:42 Download gff for
UFO04788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7142-RA | 242..1247 | 1..1000 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:23 Download gff for
UFO04788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7142-RA | 234..1239 | 1..1000 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:23 Download gff for
UFO04788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18278284..18279289 | 1..1000 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:42 Download gff for
UFO04788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14104006..14105011 | 1..1000 | 98 | | Minus |
