UFO04789.5prime Sequence
551 bp (551 high quality bases) assembled on 2009-06-30
> UFO04789.5prime
CAGTCGACATGGGTTTTTTAAACCGGATGGGTGAACTGGAGGGCCACGGT
ATGATGTTAAGTCCAACCGGAAGATCCTCGCGTTGGCGCTACGATAACTC
GGCGCCAACAAACTACGATGACAATGCATTATATTGCGGTGGATTTTGGA
AACAAACCGAAAATGATGGCAAATGTGGACTGTGCGGAGACGACTGGAGC
TTGGAGCAGCCGCGACCCAATGAGTTGGGTGGAAAATATGGCAGTGGAGT
GATTGTAAAGAGCTTTGCCGGAGTAGATGAAGCGGAAATTAATGTTAAGA
TCACAGCCAATCATCTGGGCTACTTCCGCTTCCACATCTGCGATTTGGAC
GAAAATGGCAGCGAGTCGGAGGATTGCTTTAACCAATATCCTTTGAATTT
CACCGACGGTAGCCAGAAGTACTACATTAACACCACCACTGGCGATATCC
CAGTAACCGTGAAACTGCCCAGTGATCTCAACTGCATTCATTGCGTTTTG
CGCTGGACTTACACGGCGGGAAATAATTGGGGTGTTTGTGAGGATGGGAC
G
UFO04789.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4367-RB | 939 | CG4367-RB | 32..575 | 8..551 | 2720 | 100 | Plus |
| CG4367-RA | 816 | CG4367-RA | 32..575 | 8..551 | 2720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20304319..20304725 | 551..145 | 2020 | 99.8 | Minus |
| 3R | 32079331 | 3R | 20304782..20304923 | 149..8 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:54:45 has no hits.
UFO04789.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:22 Download gff for
UFO04789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4367-RA | 27..575 | 1..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:41 Download gff for
UFO04789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4367-RA | 27..575 | 1..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:02 Download gff for
UFO04789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4367-RA | 27..575 | 1..551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:02 Download gff for
UFO04789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20304319..20304720 | 150..551 | 100 | <- | Minus |
| 3R | 20304782..20304928 | 1..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:41 Download gff for
UFO04789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16130041..16130442 | 150..551 | 100 | <- | Minus |
| arm_3R | 16130504..16130650 | 1..149 | 97 | | Minus |
