UFO04790.5prime Sequence
1136 bp (1028 high quality bases) assembled on 2009-06-30
> UFO04790.5prime
CAGTCGACATGGAGTTCCTGACTAAAGTGTGGGCCAAAGAGGCAACAGCG
CCCGAGGCAATAGAAGCCATCACCGGCGCAGCGCAAGAAAAACAAAATGC
AAAGACTGAAAAAGCATCTGCCAGTAAGGAGACGAGCACCGAAGAAACCA
CCACTGCTCAAAAGGATTGGGGCTACGACCTTTATCCGGAGCGAAGGGGC
GAAACCTTCAAGCCCAAATGGACACGAGTCCTGTTCGGCTTGGAGGGGCA
GGAGAACATTGATCGTTTCAAGTGCGAGGAGAATGTGTACTGGTGTGTCA
AAAATGGTCCGCTGGTCAAACTGATGATGGGAGCACTGAAAAGTTCCGGT
TGTCCCATCGATCTGCGCCGACACATCTCATGCGAGGTGTGCGACCCCAC
AGTCACCGGCGGTTACGATCCCAAGCTCAACCAGATCGTGGTCTGCCAGA
ATATGGCCAGGAACAAGAGCATGGTCCATGGAGTGCTAACGCACGAGATG
ATTCACATGTTCGACTACTGCAATAACGACATGGACTTCCGCAACGTGGA
CCACCTGGCCTGCACAGAGATCAGGGCGGCAAACCTGGCGCATTGCTCCT
TCTTGAGCGCCATGTTCCAAGGAGATGCCTCGCCATTTAATGTCAAGGAA
GCGCATCAGAACTGCGTCAAGTCCAAAGCCCTAGCTTCCGTGCTCGCTGT
TCGCAATATTAGCAAAGCAGATGCCGTCGCTGCTGTGGAACGTGTCTTTC
CCAAATGCTATGCAGACTTGGAGCCCATTGGCCGGAGAATCCGTCGCAAT
TCCACGGACCAGCAGAATGCTTACATGGAGGCACCCATGTATGGCTATGA
TGTATATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGA
GATCCTGGTCATGACTAGTGCTTGATTCTCACCATAAAAAACGCCCGGCG
CAACCGAGCGTTCTGACAAATCAGATGGAGTCTGAGTCATTACTGGATCT
ATCAAAGGAGTCAGCGAGCTCGATATCATTACCCCCGCCCTGCCATCTAT
CGCGAGTACTGTTTGTATTCTATTAGCATCGCGCAA
UFO04790.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5131-RA | 1051 | CG5131-RA | 78..926 | 9..857 | 4230 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17484578..17485228 | 9..659 | 3255 | 100 | Plus |
| 2L | 23513712 | 2L | 17485298..17485499 | 656..857 | 995 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:53 has no hits.
UFO04790.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:25 Download gff for
UFO04790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5131-RA | 61..920 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:56 Download gff for
UFO04790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5131-RA | 78..937 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:44 Download gff for
UFO04790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5131-RA | 78..937 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:44 Download gff for
UFO04790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17484578..17485228 | 9..659 | 100 | -> | Plus |
| 2L | 17485302..17485510 | 660..866 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:56 Download gff for
UFO04790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17484578..17485228 | 9..659 | 100 | -> | Plus |
| arm_2L | 17485302..17485510 | 660..866 | 97 | == | Plus |
