UFO04793.5prime Sequence
1091 bp (989 high quality bases) assembled on 2009-06-30
> UFO04793.5prime
CAGTCGACATGAGCCACGGCGACCAGAGTCAAAACCAGAGCAGCCAGCGG
AGCCAGGCGCTCACTGGCGGTGGTGACTCCCCGAGGGACAGGGAGAAGGA
AAAGAAGGGCTGGTTCCACTCGCTGACCAGGCGCAAGAAGTCCGACTCGG
CGCTGGCCGTGACTGCATCCGCCGCCGTCTCCACCAGTGGATCGCAGAAC
AACAACAACGAAGTGTGCGTCCTTGAGGCAGCGGACTCTTCCATGGCCAG
CTGCAGCAATGGGGGCACGGGCACAGGAACTCTGCGCAGAAGGCGGGACA
AGGACAAGCGAAACGTGTTTGCCAGACTACGAAGGAAGGTGGGCCAAGGG
CTCAGCTCCCTGCGAAACTGGCACTCCATGGGCGACTGCGACGACGGCGG
AACTACTGATGCCACCTACGAGTTCCTTACGCCGGCCATCTGTCCGGAAC
CCACGCTACCATTCACACACGACTACTTGCGCTTTATCCGGAAGAAATGG
CTTGAGCGCGAGGACGCCCACTCGCCCAACCAGATCATGTACAAGGCCTG
CTCCGAGATGCTCAACCAAGTGTGGTACTGGGGTGAGATCTCCAGGCGCG
ATTCGCAGCGGCAGTTGAGTGACAAGCCGACTGGGTCGTTTCTAGTCCGC
GACTCGGAAACCAGCGGATCCCAATTCACGCTCAGCTTTCGGATTGTGAA
CGTAACCCTGCATTATCGACTGGAATATCGCGACAATTTTTGGCACTTCG
AGGAACTTAAGTACGAGTCCATTGTCGAGATGATCGAAGATATCTTGCAC
CGCTGCACCAACGACAACTTTGTGTGCTTTGTGAAGGTTCCCAACGAGAT
GCAGCCACCGTTTCCAGTGATCCTCAAGTACCCGTTGAGCCGGTACTCAC
ATGCCCAAGCTGCAGACTTATGCCGCCGTGTTCTGCAGCGCAGATGTCTC
GCGAACAGCTGGGCCCAGTTGCCAGTGCGCGCAAATGCTGAGTACTTGTC
GGTGGGAGCGGGAGCTGTCTCCAGAGTGCAGGCTTTCTTAGACATTCGGT
GGTCGCGGCCAGTAAAGTCAATCTATCTATCTATCTAATCA
UFO04793.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Socs44A-RA | 1840 | CG2160-RA | 131..1156 | 9..1027 | 4870 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8127705..8128261 | 9..565 | 2785 | 100 | Plus |
| 2R | 25286936 | 2R | 8128324..8128780 | 566..1017 | 1900 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:20 has no hits.
UFO04793.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:28 Download gff for
UFO04793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Socs44A-RA | 66..1105 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:25 Download gff for
UFO04793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Socs44A-RA | 122..1161 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:24 Download gff for
UFO04793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Socs44A-RA | 122..1161 | 1..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:24 Download gff for
UFO04793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8127696..8128261 | 1..565 | 99 | -> | Plus |
| 2R | 8128324..8128769 | 566..1005 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:25 Download gff for
UFO04793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4015201..4015766 | 1..565 | 99 | -> | Plus |
| arm_2R | 4015829..4016274 | 566..1005 | 97 | == | Plus |
