UFO04796.5prime Sequence
1058 bp (979 high quality bases) assembled on 2009-06-30
> UFO04796.5prime
CAGTCGACATGAGAGCAATACGAGTTCTGCTGATTTTCCAACTGCTGGCT
TGTCTAATGGCCGTAATATCGGGCTGCAACCAGGGGTCCTGCCATCCGTT
CATTGGCCTGAACAAGTGCAATGGTAATGGCTATAAGGAGCCCAAACTTC
CACCTCGGGATAACGCCTGCTGCGGTGCCCATTGCGTCTACAATGGTCCA
AGTTGTCAAAATCCCGGTCCCTGCGACAGCAAACCCGTGAATCGTTGCAT
CCTGGACTCACATTGTGGCAAAGGCGTAGCCTTCTACTTCGTATGCAAGT
CAGATTGTGAACTGATAAAGGAAAATGAAGCTCGCCAGGCAGCTGGATAT
GCCCGTCTTCTTTCATTTTCGTGGGGCAAGCAGAAATGCGAGGGCATGAA
TTACAAATGCGGCATCAATTGTTGCTGTCGTGAGTATTGTCCTAAACGGT
TTTGTAAATTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGG
GGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAAC
TCACCCAGGGATGGCTGAGACGAAAACATATTCTCATAAACCTTTAGAAA
TAGGCAGGTTTCACGTACACCGCACATCTGCGATATATGTGTAGAACTGG
CGAATCGTGTGCATTCATCGACGATGAAACGTTTCAGTGCTCATGGAAAC
GGTTACAG
UFO04796.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31698-RB | 569 | CG31698-RB | 14..468 | 7..461 | 2275 | 100 | Plus |
| CG31698-RA | 491 | CG31698-RA | 14..468 | 7..461 | 2275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3173478..3173827 | 356..7 | 1750 | 100 | Minus |
| 2L | 23513712 | 2L | 3173306..3173412 | 461..355 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:55:22 has no hits.
UFO04796.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:22 Download gff for
UFO04796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-RA | 1..457 | 8..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:10 Download gff for
UFO04796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-RA | 1..457 | 8..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:27 Download gff for
UFO04796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31698-RA | 8..471 | 1..465 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:27 Download gff for
UFO04796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3173306..3173412 | 355..461 | 100 | <- | Minus |
| 2L | 3173480..3173829 | 1..354 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:10 Download gff for
UFO04796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3173306..3173412 | 355..461 | 100 | <- | Minus |
| arm_2L | 3173480..3173829 | 1..354 | 98 | | Minus |
