UFO04802.5prime Sequence
1117 bp (1014 high quality bases) assembled on 2009-06-30
> UFO04802.5prime
CAGTCGACATGCCCGATCTGAAGTATATGTTGACGATTCTAAGCCTGTAT
TTCTTTGTAGGAAGTGTTCAAGCGAATTGCTTAATCGACTTGGCTCATTT
GAATGCCAATTATGTGTACTTAAGCCAAAATAACGGAGTCTATGATATTC
AGCGCAGTGATATTGTGGAAATCCACCAGACGTTGTATCTGCTGTGCAAT
GGAGGACTTCATCGCACCACATTCCTGTGTCGATATGACAGTGTTTTCAG
TCCAGCGCTAAGCTCAGCAGCATGTGCACCACCCGATCCTGTCGTGGTAA
AAGTACCAGATACATCTTGTTCCATTCCGAGTGCTACGTTCGCCGTAGGA
TTTTCCTTCAATGGACGCTTTATGGAACTGTATCGCAATTGTTTTGATGG
CTACAGCTTGGCGTTTCAACATTCCATCTACAAGGCTTATCGCTACGTAA
ACACCGTTCCACGTCCCAATCCCACTTGGCAGTCGGATCAATTAAGTGGT
GGATTTGACAATGCCTACGAGGGAAGAGCAACACAAGCTTGTTTGCTCAC
TAACCTGGGCGCAGTACAGCCGCAGTGTAAATTTGATCGTGGCCACATGA
CACCGGCTTCTGCATTTATATCCACAGAGCTGAAGAAGTCAACGTTCAGG
TATCTAAACGCTATCCCCCAATATCGAGGAGTTAATCGTGGCAAATGGAA
GGCCGTTGAGACCTGAGTGAACAATATGGTTAGGGGACTGTATGATAATC
CAATCATCAATAATGTACAAATACCGCGTACTTACGATGTCCTTAAGGTT
TGCATTGGGGCATTGGGAGTGCATAGACTAAGACATAATACCAATAACAA
TATGATACCAATTTACCTGTTGGATAATAACAAATTCCCGTGCCAGAGTG
ATGTACAAGATAGTTAGCCATCTCTCCGGAGATAATGGTAATGCTGACCT
ACACGACGTAAGTCTACCCAATCAGCAGCATTAACAGATCTGCATGTGAA
TACCCTGTCATCCGGGTCTACTAATACGAGACGTGGAAAACACTGCTTGC
TGCAATCGTACGGTTTTAATAACATAAACGCCTCCAACTTACTGGTTGGC
CAGGCTTTTCCTAACAT
UFO04802.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9989-RA | 1214 | CG9989-RA | 35..1138 | 9..1096 | 4920 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28671287..28671860 | 454..1019 | 2420 | 97.2 | Plus |
| 3R | 32079331 | 3R | 28670838..28671236 | 55..453 | 1995 | 100 | Plus |
| 3R | 32079331 | 3R | 28670738..28670783 | 9..54 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:31 has no hits.
UFO04802.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:31 Download gff for
UFO04802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9989-RA | 1..1035 | 7..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:29 Download gff for
UFO04802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9989-RA | 27..1067 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:30 Download gff for
UFO04802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9989-RA | 27..1067 | 1..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:30 Download gff for
UFO04802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28670730..28670783 | 1..54 | 92 | -> | Plus |
| 3R | 28670838..28671236 | 55..453 | 100 | -> | Plus |
| 3R | 28671287..28671860 | 454..1019 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:29 Download gff for
UFO04802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24496452..24496505 | 1..54 | 92 | -> | Plus |
| arm_3R | 24496560..24496958 | 55..453 | 100 | -> | Plus |
| arm_3R | 24497009..24497582 | 454..1019 | 98 | == | Plus |
