UFO04807.5prime Sequence
1154 bp (1052 high quality bases) assembled on 2009-06-30
> UFO04807.5prime
CAGTCGACATGTCGCAGACTGCCAACTGGGTTCTGCCGCTTTTGCTGTGG
CTTCTCTGCATGGGATTCCCCATTCTGCATGGCGCCGATCTCTGCCAGCC
CATCGGATGGCGGAACTTCCAGTGCAGCGAGGTCGCTTCTCTGCAGGATC
TGGTGGACTTGGGCGCCGAAAACTGGCACACGCTCGCCATACGGAATGTG
CAAACGGAACTGGAGGTGGGATCAGGCGAAAATGCCGATCACTTGGCCAA
CTTGCTAGACTTGGATCTGACTGGCGCGGCTCCAATAAATGTGCATACCA
ACGGATTTTCCATTCTGCCCAATCTGCGGCAACTGAATCTCAGTGGCTGC
GGTCTCGTTGACATCCGGGGAAATCACTTTGCGCCTGAGTCAGCGCTCCA
GCGGATCGATTTTAGTCACAATCAAATGGAGCTTCTGGATCGCGACTTTT
TTGGCAATCTAAGGAAATTGATCTATGCGAATTTTTCGCACAATGCTCTA
AAGCAATGCGATCTGCCGCACATGCCACTGCTAAATCGACTGGAATTGGG
GCACAATCGATTGGTGAATGCCACCTTCGGAGTTTGTCCACAGCTGCAGG
AGTTGATTTTGAATGACAATCAACTGATACAGTTGGACGTGAATGCCTTT
CGTGGACTCCATGGTCTGTTGGAGCTGCAGCTAAGCGGGAATAGATTGAG
CTCCATTGGCCTGGAAACCTTTCAGCCGCTCGCCCAGCTGCGAAAGTTGA
ACCTTTCCCAAAACGCCCTCGATGCACTGCGTCCAAATGTGTTTGGAGCG
GTTCAGAACTTTGTGTTGCATCTACAGCAGCTGGATTTGTCCGGCAATCG
CATCCGCCTGCTGTTCGACAACCAGTTCAGAGTGTTGGCCAGACTGCAGA
TGCTGGATGTGTCCAGGAACAGCATCGCCAGCCTCAGTCCTGCTCACTTT
GTGGGCTTGGGCTCACTACGGAAGCTGTATCTGCAGTACAATGCTATATG
AAAATCAAACCGGGCCACCTTTGCCGCCCTGCTGAACCTGGAACACCTTG
GATCTGTCGTACAATACTTGAATTCTGGAAGAAACAAATCTTCCGGAGCA
ACACTTGCCGCGCATGCAAAGCTCAACTGAATGCAATCGATGAGACACTC
TGCA
UFO04807.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6749-RA | 1834 | CG6749-RA | 6..1141 | 9..1139 | 5315 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9732938..9733346 | 632..224 | 2045 | 100 | Minus |
| 3L | 28110227 | 3L | 9731952..9732444 | 1121..631 | 2030 | 96.4 | Minus |
| 3L | 28110227 | 3L | 9733585..9733802 | 226..9 | 1090 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:16:43 has no hits.
UFO04807.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:37 Download gff for
UFO04807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6749-RA | 1..1146 | 5..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:13 Download gff for
UFO04807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6749-RA | 1..1146 | 5..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:36 Download gff for
UFO04807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6749-RA | 1..1146 | 5..1143 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:36 Download gff for
UFO04807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9731926..9732442 | 633..1143 | 96 | <- | Minus |
| 3L | 9732938..9733344 | 226..632 | 100 | <- | Minus |
| 3L | 9733586..9733807 | 1..225 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:13 Download gff for
UFO04807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9725026..9725542 | 633..1143 | 96 | <- | Minus |
| arm_3L | 9726038..9726444 | 226..632 | 100 | <- | Minus |
| arm_3L | 9726686..9726907 | 1..225 | 98 | | Minus |
