UFO04808.5prime Sequence
1122 bp (1015 high quality bases) assembled on 2009-06-30
> UFO04808.5prime
CAGTCGACATGCATACTACAGCAGTTGTGACCCTATTTTCTGTCCTGCTT
GTGGTCTTGGTGGCTGGACAAAATCGGAACTGCGACGAGTTGACCCGGAG
ATGTGAACGCTGTGTGGAAACATTGAATAATGCAGCTGATCGTAACCTGC
CCGTCCTCAATCAAGAGTGCAGAACTAAGACTCGGAACAATTGGCGTTGG
AGGAATGTAGGACGTTGTGAGCTGACCAGGCTGAACTGCTTGGGTTCTAA
TCGACGCATGAACTGTAATGATATTGCTGAACTCGCTGGCATGGATCGTA
TTAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGA
AGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACC
CAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAA
ATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTA
GAAACTGCCGGAATCGTCGTGCTATTCACTCCAGAGCGATGAAAACGTTT
CAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATC
ACAGCTCACGTCTTTCATTGCCATACGAAATTCAGATGAGCATTCATCAG
CGGCAAGAATGTGAATAACGCGATAAACTTGTGCTTATTTTTTCTTTACG
TCTTAAAAGCGTAATATCAGCTGAACGTTGTAAGTAATGGAGCAACTTGA
CTGATGCTCAAGGTCTGCGATG
UFO04808.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eig71Ed-RA | 415 | CG7350-RA | 62..358 | 9..305 | 1485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15652700..15652903 | 42..245 | 1020 | 100 | Plus |
| 3L | 28110227 | 3L | 15652977..15653039 | 243..305 | 315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 873..940 | 123 | 68.1 | Plus |
UFO04808.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:38 Download gff for
UFO04808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ed-RA | 55..354 | 9..309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:16 Download gff for
UFO04808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ed-RA | 62..361 | 9..309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:14 Download gff for
UFO04808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ed-RA | 62..361 | 9..309 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:14 Download gff for
UFO04808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15652598..15652631 | 9..42 | 100 | -> | Plus |
| 3L | 15652701..15652901 | 43..243 | 100 | -> | Plus |
| 3L | 15652978..15653039 | 244..305 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:16 Download gff for
UFO04808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15645698..15645731 | 9..42 | 100 | -> | Plus |
| arm_3L | 15645801..15646001 | 43..243 | 100 | -> | Plus |
| arm_3L | 15646078..15646139 | 244..305 | 100 | == | Plus |
