UFO04809.5prime Sequence
1047 bp (-112 high quality bases) assembled on 2009-06-16
> UFO04809.5prime
CAGTCTCTAATTTGCTGCAAACAATTCGAAGGATGAGCCAAGGTGCCTCG
GAGGTGCCACTTTCTCCTCCTCGTCTGAAGTACTGTGAGCGCAAGGACGC
CTTCCTGGAGGATAACATCAAGGTGAAGAATCCCTTCTGTGTATTCCGAG
ACTGGCTGGAGTTGGCGCTGAAAACCCCGGAGATCTTGGAGCCCAATGCC
GCCGCCCTGGCTACCGTGAGTGCGGAGGGTAGGCCTTCCAATCGCTATGT
GCTGGTTAAAGAAGCCACCGCCGAGGGATTCACCTTCTTCACGAACTACG
GTAGCCGCAAGGCTGAGGACATCAAGTCCAATCCCTATGTAGCCATATCC
TTCTACTGGCTCCCTTTGCGGCGAAGTGTCCGCATCGAGGGCGTGGCTGA
GAAGATCTCGGTGGAAGACTCCCTCAAGTACTTCCACCAGCGACCAAGAG
CCAGCCAAATCGGAGCCGCTGCCAGTCCGCAGAGCCAGCGGATTCCGTCG
CGCAGCTACTTGGACGACGTGGAGGCGGCAATTAAGCTAGAACTGGGTCC
CGATGGCGAGGTGCCGCTGCCCAACTGGGGTGGCTACTTGGTGCGTCCCG
ACCTCATTGAGTTCTGGCAGGGTCAGACCGATCGGCTCCACGATCGCATC
CGCTTTAGACGAGGTGGAGGAGTAGAATCCGAAGTCGACAGCAAACTGGT
TCACAAGGAGAGGATGGTTGGGTGTACGAACGGCTGGCTCCTGCAAGCTT
TCTAGACCATTCGTCTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
TCATAATCATAATCATATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGATTCTCACCAATAAAAACGCCCGGGCGGCACCGAGCGTTCTG
AACAAATCAGATGGAGTTCTGGAGGTCATTACTGGATCCTTCAACAAGGA
GTCCAGCGAGACTCGAATATTCTGATTACCGCCACCGCCTTGCCACTACT
ATGCAATACTGGTTGTAATTCATTAAAACATTCTGGCCGACATCGGG
UFO04809.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgll-RB | 1314 | CG31472-RB | 204..935 | 12..742 | 3575 | 99.3 | Plus |
| sgll-RA | 1253 | CG31472-RA | 143..874 | 12..742 | 3575 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7810861..7811533 | 71..742 | 3315 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7810735..7810787 | 12..64 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:28:58 has no hits.
UFO04809.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:39 Download gff for
UFO04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31472-RB | 117..856 | 9..748 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:19 Download gff for
UFO04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31472-RA | 109..848 | 9..748 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:19 Download gff for
UFO04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgll-RA | 140..879 | 9..748 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:19 Download gff for
UFO04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7810732..7810789 | 9..66 | 94 | -> | Plus |
| 3R | 7810857..7811538 | 67..748 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:19 Download gff for
UFO04809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3636454..3636511 | 9..66 | 94 | -> | Plus |
| arm_3R | 3636579..3637260 | 67..748 | 99 | == | Plus |
