UFO04812.5prime Sequence
1099 bp (989 high quality bases) assembled on 2009-06-30
> UFO04812.5prime
CAGTCGACATGAGGGACAACGAAAAAGGACCCGTCATCGGCATCCGACAC
ATGCAGGCCCTCCTCTTATTCTTGGCCATCGTCGTGAACTACACAGCCCG
GCTCAGCGTTAGCGTAGCAATAGTTGCTATGACGGATGCGGCCACTACTA
ACTTGGACTTTCCTGAGTACAACTGGAATGGTGTGCAGCAATCATACATT
CTGTCCAGCTTCTACTGGGGATACATCGTCACTCAATTTCCAGCCGGTTT
TCTCGTTCGCCGCTTCGGGGCTAAGGCGGTGCTGCTCGTCCCCACGCTGG
CTACGGCCGTCCTGAGCGGTCTCACACCGTATTGCGTGGCCTGGGGTGGC
TGGCAGGCTTTTTGCACCATCCGGATTGTGGAGGGTCTTTTTCAAGGTCT
AATCTTTCCGTGCATACATGAGCACCTGGCCAAGTGGTCTCCGCCAGAGG
ATCGAAACCGACTGGGCGCCTTTGCGTACTCTGGAGCCGACTGCGGATCA
GTGCTGGCCATGGCTAGCAGCGGTCTTATTGCGAATGGATCAATGGGCTG
GCCTGGAATTTTCTACGTGTCGGCGGGCACTTGCGGGCTGTGGTGCCTAC
TGTGGGTGCTATTCGGCGCTAACAACGCGCCCAGTTCCCGGCTAATCGGT
TCCCGGGAACGGGAGCACATCGAGCGCTCTATGAAGCGGCAGGATGGCTT
TCACGCACAGAAGATTCCAATCCCGTGGCGGGCCATCTGGTCATCCAGTC
CGTTCTACGCACTGTTGGTGGTACGGAGCGCTCAGGGCTGGGCCAACTCC
ACCATGCAACTGCAGACACCGTCCTACATGCACGGCGTCCTGGAGATGGA
CATTAAAAGCAACGCTCTCTACTCGGCCCTGCCCTTTCTGGCCATGGTGG
GGGTATGTCGTATGTATACCTGGATTTTCGCAGAATGTGGCCATGTCGAA
GCAATGGATGTCCCTAACCACGCTGCCGCAAGTCAATTAACACCGGTTTC
CCTAATGGGGAACCTGCGGCGGGCCTATATGGGATGGCTTTCTGATAAAA
AGCCAAAACACTCTGGGCCATCGCACTGATGACAATCCAGGCCTGGCCT
UFO04812.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7881-RB | 2807 | CG7881-RB | 148..1229 | 9..1099 | 4960 | 97.8 | Plus |
| CG7881-RA | 2084 | CG7881-RA | 148..1229 | 9..1099 | 4960 | 97.8 | Plus |
| CG9826-RC | 2096 | CG9826-RC | 431..662 | 340..571 | 290 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5962117..5963031 | 1087..165 | 3965 | 97.3 | Minus |
| 2R | 25286936 | 2R | 5963093..5963232 | 165..26 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 22841231..22841462 | 340..571 | 260 | 74.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:43 has no hits.
UFO04812.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:33 Download gff for
UFO04812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7881-RA | 121..1109 | 1..995 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:02 Download gff for
UFO04812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7881-RA | 141..1129 | 1..995 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:13 Download gff for
UFO04812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7881-RA | 141..1129 | 1..995 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:13 Download gff for
UFO04812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5962206..5963031 | 165..995 | 99 | <- | Minus |
| 2R | 5963094..5963230 | 28..164 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:02 Download gff for
UFO04812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1849711..1850536 | 165..995 | 99 | <- | Minus |
| arm_2R | 1850599..1850735 | 28..164 | 100 | <- | Minus |
