UFO04814.5prime Sequence
1136 bp (1033 high quality bases) assembled on 2009-06-30
> UFO04814.5prime
CAGTCGACATGGAGTACGGTAGATTTCAAACGGTCGGTTGTCTGTTGATC
ATCCTGGGTATGGCCAGTTCTCAGCCCCTGTCCTGGTGTGATCCGGACTT
ATGTCCTGACAACACGGTGCACATAGCGTGTAATAACGATGGTAAATTCC
ATGAAAGCTGCTCCCCGGATGCCACTATGGTGGACCTGAAGCCTTATCGC
AAACTTATCGTGAATGAGCACAACAAGCGCAGGAACTACATTGCCTCTGG
ATCTTTGCCCGGCTACTATCCGGCCACCCGCATGGCCACCATGGTGTGGG
ATGAGGAGCTGGAGTACCTGGCCACGTTGAACCTGAAAACCTGTTACCTG
GAGCACGACGACTGCCACAACAGCTACCGCTTCCGGAATCTGGGTCAGAA
TCTCTGCGGTGTCGATCGTCGGAGGAACTGGGACTTGAACGTGACCAATC
TGGTGGAGCAGTCGATGGGCTTGTGGTTTGGAGAGCACAAACTCATCGAC
AGCAGTTACATTACCGATTTTAAGCTGACCAAAGACCTCGAAAAGTATGG
ACACTTTGTGGAAACCGTGCTGGACAGGAACACCCATGTGGGCTGTGCCA
TGATGCGCTTCACCAATCCGCAGTACCCCTTCCTCTACATCTACAATACT
GCCTGCAACTATGCCAGTGTCTATGCCATCGGAGTTCCTGTTTACAATGC
CGGAAAGCCCGCCTCTGAATGCCGGACGGGAAGTAATCCAGAGTATCCCG
CACTCTGTTCCATCAAGGAACAATACAATCCAAACCACAATTTCTACGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAATTCAGATGGAGTTCTGAGGTCATTACTGGATCATCAA
CAGGAGTCCAGCGAGCTCGATATCAATACGCCCCGCCTGCCCCTCATCGC
AGTACTGTTGTATCATAGCATTCTGCGACATGGAAGCCATACAACCGCAT
GATGAACTGATCGCCACGGCCTCAGACCTTGCCCTT
UFO04814.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9822-RA | 883 | CG9822-RA | 36..826 | 7..797 | 3955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21347260..21347654 | 538..144 | 1975 | 100 | Minus |
| 2R | 25286936 | 2R | 21346932..21347190 | 797..539 | 1295 | 100 | Minus |
| 2R | 25286936 | 2R | 21347712..21347848 | 143..7 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:37:16 has no hits.
UFO04814.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:42 Download gff for
UFO04814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9822-RA | 2..799 | 6..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:15 Download gff for
UFO04814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9822-RA | 30..831 | 1..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:36 Download gff for
UFO04814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9822-RA | 30..831 | 1..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:36 Download gff for
UFO04814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21346927..21347190 | 539..804 | 98 | <- | Minus |
| 2R | 21347260..21347654 | 144..538 | 100 | <- | Minus |
| 2R | 21347712..21347854 | 1..143 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:15 Download gff for
UFO04814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17234432..17234695 | 539..804 | 98 | <- | Minus |
| arm_2R | 17234765..17235159 | 144..538 | 100 | <- | Minus |
| arm_2R | 17235217..17235359 | 1..143 | 98 | | Minus |
