Clone UFO04819 Report

Search the DGRC for UFO04819

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:48
Well:19
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG2070-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO04819.5prime Sequence

1139 bp (1028 high quality bases) assembled on 2009-06-30

> UFO04819.5prime
CAGTCGACATGAGTGCACCCACGGATTACCTGTTCTGCCCGCTGGCATAT
GGGTCAGCTCTTTCGGCCATCGGAATCTATCTGCTCCGACAATATATGCA
GGGAGGTCAGTTCACCACGAAAACGAATGAGACCGGCAGAGTGGCGATTG
TGACCGGCTGCAACCAGGGGATTGGCAAGGAGACCGTTCTGGAGCTGGCC
CGCAGGGGAGCTACCGTGTACATGGCTTGTCGGGACATGAAGAAGTGCGA
GAATGCCCGTCGGGAGATCATCAAAGCGACCAACAACCAGAACATCTTCG
CACGCCAATTGGACCTGTGCTCCATGAAGTCCATTAGGAACTTCGCTGCT
GGCTTTAAGCGGGAGCAAAACAAGCTTCACATTCTTATCAACAACGCCGG
CATTATGGACTGCCCCAAAATGCTGACGGAGGACGGATTTGAAATGCAAA
TCGGAGTGAATCACATGGGCCACTTCCTCCTCACACTTCTGCTTCTCGAT
GTCCTGAAGAGTTCCGCGCCCAGTCGCGTTGTGGTCCTGTCCAGCATTGC
TCACCGCTTCGGAAGGATTAAGCGTGACGACCTGAACAGCGAAAAGTCCT
ATGACAGAAAGATGGCCTACTGTCAGAGCAAATTGGCCAACGTCCTCTTC
ACCAGGGAGTTGGCGAAACGCCTGAGCGGAACAGGGGTCACGGTAAATGC
CCTACATCCCGGAGTAGTAAACACGGAACTGTTCCGCAATACACCCTTTT
TGGGTTCGTGGTTTGGAAAATTGCTCATAGCCCCTATTATATGGATATTC
ATAAAGACGGCTAGGAATGGCGCACAGACGACCCTGTACGCTGCCCTGGA
TCCCAGTTTGGAAAAAGTATCTGGAAGATACTTCAGCGATTGCAAGCAGA
AGCACGTGGCTCGGCCGCCCAGTATGACGATGATGCCCAATTCCTATGGG
CGGAAAGTGAAAAGTGGACGGGAATTAATAATAGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCCGGCCCAGGTAGTGGTCTAATCTATCATATCATATC
ATAATCCCACTAGCTAGGAAGATTCTGGTCATGACATAGTGCTGAATCTC
ACAATAAAAACGCCCGCGACGACGTCTGACATTCGAATG

UFO04819.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2070-RB 1381 CG2070-RB 183..1155 9..980 4840 99.9 Plus
CG2070-RA 1105 CG2070-RA 56..1028 9..980 4840 99.9 Plus
CG2065-RB 1233 CG2065-RB 181..822 91..732 630 74 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7662498..7662915 352..769 2090 100 Plus
2R 25286936 2R 7662165..7662429 88..352 1325 100 Plus
2R 25286936 2R 7662971..7663182 770..980 1010 99.5 Plus
2R 25286936 2R 7662037..7662116 9..88 400 100 Plus
2R 25286936 2R 7664035..7664296 91..352 350 75.6 Plus
2R 25286936 2R 7664643..7664797 578..732 235 76.8 Plus
Blast to na_te.dros performed on 2014-11-28 19:35:46 has no hits.

UFO04819.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:46 Download gff for UFO04819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2070-RA 26..1016 9..998 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:56 Download gff for UFO04819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2070-RA 56..1046 9..998 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:20 Download gff for UFO04819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2070-RA 56..1046 9..998 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:20 Download gff for UFO04819.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7662499..7662915 353..769 100 -> Plus
2R 7662037..7662116 9..88 100 -> Plus
2R 7662166..7662429 89..352 100 -> Plus
2R 7662971..7663182 770..980 99 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:56 Download gff for UFO04819.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3549542..3549621 9..88 100 -> Plus
arm_2R 3549671..3549934 89..352 100 -> Plus
arm_2R 3550004..3550420 353..769 100 -> Plus
arm_2R 3550476..3550687 770..980 99 == Plus