UFO04819.5prime Sequence
1139 bp (1028 high quality bases) assembled on 2009-06-30
> UFO04819.5prime
CAGTCGACATGAGTGCACCCACGGATTACCTGTTCTGCCCGCTGGCATAT
GGGTCAGCTCTTTCGGCCATCGGAATCTATCTGCTCCGACAATATATGCA
GGGAGGTCAGTTCACCACGAAAACGAATGAGACCGGCAGAGTGGCGATTG
TGACCGGCTGCAACCAGGGGATTGGCAAGGAGACCGTTCTGGAGCTGGCC
CGCAGGGGAGCTACCGTGTACATGGCTTGTCGGGACATGAAGAAGTGCGA
GAATGCCCGTCGGGAGATCATCAAAGCGACCAACAACCAGAACATCTTCG
CACGCCAATTGGACCTGTGCTCCATGAAGTCCATTAGGAACTTCGCTGCT
GGCTTTAAGCGGGAGCAAAACAAGCTTCACATTCTTATCAACAACGCCGG
CATTATGGACTGCCCCAAAATGCTGACGGAGGACGGATTTGAAATGCAAA
TCGGAGTGAATCACATGGGCCACTTCCTCCTCACACTTCTGCTTCTCGAT
GTCCTGAAGAGTTCCGCGCCCAGTCGCGTTGTGGTCCTGTCCAGCATTGC
TCACCGCTTCGGAAGGATTAAGCGTGACGACCTGAACAGCGAAAAGTCCT
ATGACAGAAAGATGGCCTACTGTCAGAGCAAATTGGCCAACGTCCTCTTC
ACCAGGGAGTTGGCGAAACGCCTGAGCGGAACAGGGGTCACGGTAAATGC
CCTACATCCCGGAGTAGTAAACACGGAACTGTTCCGCAATACACCCTTTT
TGGGTTCGTGGTTTGGAAAATTGCTCATAGCCCCTATTATATGGATATTC
ATAAAGACGGCTAGGAATGGCGCACAGACGACCCTGTACGCTGCCCTGGA
TCCCAGTTTGGAAAAAGTATCTGGAAGATACTTCAGCGATTGCAAGCAGA
AGCACGTGGCTCGGCCGCCCAGTATGACGATGATGCCCAATTCCTATGGG
CGGAAAGTGAAAAGTGGACGGGAATTAATAATAGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCCGGCCCAGGTAGTGGTCTAATCTATCATATCATATC
ATAATCCCACTAGCTAGGAAGATTCTGGTCATGACATAGTGCTGAATCTC
ACAATAAAAACGCCCGCGACGACGTCTGACATTCGAATG
UFO04819.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2070-RB | 1381 | CG2070-RB | 183..1155 | 9..980 | 4840 | 99.9 | Plus |
CG2070-RA | 1105 | CG2070-RA | 56..1028 | 9..980 | 4840 | 99.9 | Plus |
CG2065-RB | 1233 | CG2065-RB | 181..822 | 91..732 | 630 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7662498..7662915 | 352..769 | 2090 | 100 | Plus |
2R | 25286936 | 2R | 7662165..7662429 | 88..352 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 7662971..7663182 | 770..980 | 1010 | 99.5 | Plus |
2R | 25286936 | 2R | 7662037..7662116 | 9..88 | 400 | 100 | Plus |
2R | 25286936 | 2R | 7664035..7664296 | 91..352 | 350 | 75.6 | Plus |
2R | 25286936 | 2R | 7664643..7664797 | 578..732 | 235 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:46 has no hits.
UFO04819.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:46 Download gff for
UFO04819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 26..1016 | 9..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:56 Download gff for
UFO04819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 56..1046 | 9..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:20 Download gff for
UFO04819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2070-RA | 56..1046 | 9..998 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:20 Download gff for
UFO04819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7662499..7662915 | 353..769 | 100 | -> | Plus |
2R | 7662037..7662116 | 9..88 | 100 | -> | Plus |
2R | 7662166..7662429 | 89..352 | 100 | -> | Plus |
2R | 7662971..7663182 | 770..980 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:56 Download gff for
UFO04819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3549542..3549621 | 9..88 | 100 | -> | Plus |
arm_2R | 3549671..3549934 | 89..352 | 100 | -> | Plus |
arm_2R | 3550004..3550420 | 353..769 | 100 | -> | Plus |
arm_2R | 3550476..3550687 | 770..980 | 99 | == | Plus |