UFO04821.5prime Sequence
1087 bp (963 high quality bases) assembled on 2009-06-30
> UFO04821.5prime
CAGTCGACATGAAGGCTTTCTTTGCTCTGGTGCTCCTGGCCATTGCCGCT
CCTGCCCTGGCAGGTCGCACCCTCGACCGCTGCTCGCTGGCCCGCGAGAT
GGCCGACTTGGGAGTTCCCCGCGACCAGCTGGACAAGTGGACCTGCATTG
CCCAGCACGAGAGTGACTACCGCACCTGGGTGGTGGGACCTGCCAACTCC
GATGGCTCCAACGACTACGGAATCTTCCAGATCAACGATCTGTACTGGTG
CCAGGCCGACGGACGCTTCTCCTACAACGAGTGCGGCTTGAGCTGCAATG
CCCTCTTGACCGACGACATCACCAACTCTGTCCGTTGCGCCCAGAAGGTC
CTCAGCCAGCAGGGATGGTCCGCCTGGGCCGTCTGGCATTACTGCAGCGG
ATGGTTGCCGTCCATCGATGAGTGCTTCGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGGAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT
TGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTT
AAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACAT
ATTTCTCAATAACCCTTTAGGAAATAGGCCAGGTTTTCACCGTACACGCC
ACATCTTGCGAATATATGTTGTAGAAACTGCCGAATCGTCGTGTATTCAC
CTCCAGAGCGATGAAAACGTTTCAGTTGCTCCATGGAAAACGGGTGTAAC
AGTGAAACCATATCATATCACCAGCCACCGTCTTCCA
UFO04821.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LysS-RA | 492 | CG1165-RA | 24..445 | 7..428 | 2110 | 100 | Plus |
| LysB-RB | 611 | CG1179-RB | 22..443 | 7..428 | 1025 | 83.9 | Plus |
| LysB-RA | 486 | CG1179-RA | 22..443 | 7..428 | 1025 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1227770..1228191 | 7..428 | 2110 | 100 | Plus |
| 3L | 28110227 | 3L | 1207392..1207813 | 7..428 | 975 | 83.1 | Plus |
| 3L | 28110227 | 3L | 1212952..1213371 | 9..428 | 950 | 82.7 | Plus |
| 3L | 28110227 | 3L | 1210758..1211126 | 428..63 | 895 | 83.5 | Minus |
| 3L | 28110227 | 3L | 1218286..1218595 | 402..96 | 735 | 83.2 | Minus |
| 3L | 28110227 | 3L | 1194874..1195241 | 427..63 | 560 | 77.4 | Minus |
| 3L | 28110227 | 3L | 1210536..1210724 | 63..251 | 495 | 84.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:35 has no hits.
UFO04821.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:46 Download gff for
UFO04821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysS-RA | 1..434 | 5..439 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:22 Download gff for
UFO04821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysS-RA | 17..455 | 1..439 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:46 Download gff for
UFO04821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysS-RA | 17..455 | 1..439 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:46 Download gff for
UFO04821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1227763..1228191 | 1..428 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:22 Download gff for
UFO04821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1227763..1228191 | 1..428 | 99 | == | Plus |
