UFO04822.5prime Sequence
1091 bp (977 high quality bases) assembled on 2009-06-30
> UFO04822.5prime
CAGTCGACATGAATTTTAAAACGTCTTTGATCTGTTTCGCACTGCTACTG
ATTGGAACTCTATGCTCGGCCTATTCCAATCAAGAACGTCAACGTGACAG
TCGTAGGGTTGCTGAAATTATGCGAACCTCCTGGGACGACAATACCAAAA
TCAAAAGAATCCAGGAACTACTTACCATATACAATCGCATGGCTCCTAGC
TTAAGACCAGATGAAAGGGCGAGAATGGACAGATTCATAAGTGGATATAC
GGGAGAAATCATGGTCGATGGAGTACCCAGTCAAGGTGGTGCTAGAAGGA
TCTTTAAGAAGATTCTGTCTCCGGCGGCAAAGAGCGTGGCAACTGGATTC
TTTACCGAACTCGGTGCAAGTCTTGCAAGCATATTAACTAGCTGGTTTCC
AGCTAACACAGAACGAAACCATGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAA
AACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCA
TAAACCCTTTAGGGAAATAGCCAGGTTTTCACCGTACACGCCACATCTTG
CGATATATGTGTAGAACTGCGGAAATCGTGTGTATTCACTCCAGAGCGAT
GAAAACGTTCAGTTGCTCATGGAAACGGTGTAACAGGGTGAAACTATCCC
TATCACCAGCTCACGGCTCATGGCCATACGAATCGAATGAA
UFO04822.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TotB-RA | 526 | CG5609-RA | 41..454 | 9..422 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20874060..20874450 | 32..422 | 1955 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 5117..5186 | 117..186 | 143 | 67.1 | Plus |
UFO04822.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:40 Download gff for
UFO04822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TotB-RA | 29..446 | 9..426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:21 Download gff for
UFO04822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TotB-RA | 41..458 | 9..426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:17 Download gff for
UFO04822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TotB-RA | 41..458 | 9..426 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:17 Download gff for
UFO04822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20873978..20874000 | 9..31 | 100 | -> | Plus |
| 3R | 20874060..20874450 | 32..422 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:21 Download gff for
UFO04822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16699700..16699722 | 9..31 | 100 | -> | Plus |
| arm_3R | 16699782..16700172 | 32..422 | 100 | == | Plus |
