UFO04826.5prime Sequence
1143 bp (1039 high quality bases) assembled on 2009-06-30
> UFO04826.5prime
CAGTCGACATGATGCTGACTATACTGTTTGCACAACAGTACCAAATTGTT
GGAGATGTACTTCGAATATGGATGAATCGCAAGAGTTTGGAATTCTACGA
AAGTCGCTGCCAGTGCTGCGGAGTTTTGGGACCTGACGACTACAAGTTGG
GCGATCTGAATATCCCAAAATCCTGTTACAAGAATGGCAGTGAAAGGGAT
GAGGACCTGTACCGATCAGGCTGCTCCACGCGCTCCATAAAGCCCGCGTC
GCCCATCATCCATGTGATCTCCTTCGTAATTCAGTCATATGCATTGAGGT
ATTCCTTATTATCCTGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC
CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGA
AAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTG
GTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAA
CCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCG
AATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCG
ATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTAACAAGGTGAACACT
ATCCCATATCACAGCTCACGTCTTTCATTGCATACGAAATTCGGATGAGC
ATTCATCAGGCGGCAAGATGTTGAATAAAGCGGATAAACTTGTGCTTATT
TTTCTTTACGGCTTTAAAAGCGTAATATCCAGCTGAACGGTCTGTTAGTT
ACTGAGCACTGACTGATTGCTCAGTCCTACAGCCATGGATTCA
UFO04826.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42661-RB | 2597 | CG42661-RB | 1659..1977 | 9..317 | 1435 | 96.9 | Plus |
| CG42661-RA | 2531 | CG42661-RA | 1593..1911 | 9..317 | 1435 | 96.9 | Plus |
| CG42660-RB | 2597 | CG42660-RB | 1659..1977 | 9..317 | 1435 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7467920..7468096 | 108..284 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 7467760..7467858 | 9..107 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:17 has no hits.
UFO04826.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:48 Download gff for
UFO04826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp66A-RA | 220..532 | 9..322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:29 Download gff for
UFO04826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp66A-RA | 220..532 | 9..322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:26 Download gff for
UFO04826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42660-RB | 1659..1981 | 9..322 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:26 Download gff for
UFO04826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7467760..7467858 | 9..107 | 100 | -> | Plus |
| 3L | 7467920..7468096 | 108..284 | 100 | -> | Plus |
| 3L | 7468156..7468188 | 285..317 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:29 Download gff for
UFO04826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7460860..7460958 | 9..107 | 100 | -> | Plus |
| arm_3L | 7461020..7461196 | 108..284 | 100 | -> | Plus |
| arm_3L | 7461256..7461288 | 285..317 | 100 | == | Plus |
