UFO04827.5prime Sequence
1154 bp (1052 high quality bases) assembled on 2009-06-30
> UFO04827.5prime
CAGTCGACATGGGTTTCGAACCCTCTGAGGATAAGGCAAGGCCTGGAGGT
CTTGGCGTGCGACACTGGCAGGCGGTTCTTCTGTTCGTGGGCATGATGAT
CAACTACTTCCAGCGGGTGAACATCTCGGCTGCCATTGTGCCCATGACGC
AGTCCACCGCGGGGGCTCCGTTCTACACCTGGGATACGTCGGACAAGTCC
CTGATCCTCAGCAGCTTTTTCTGGGGCTATGTGGTCTCCCAGGTGCCGGC
AGGACTGCTTGCCAAGCGATTTGGAGCCAAGTTAGTGCTGGGCCTGGCGA
CTGCAATCGGAGGTATTTTGTGCTTCTTCCATCCCATTGCAGCCAAAAGC
GGGTGGCAGAGTATCTGCGTTCTGCGCGTTCTTACCGGTCTGGTCCAGGG
CACGGTTTATCCGTGTGTCCACACGCTGCTGGCTAAGTGGGTGCCACGCA
CTGAGCGGGGACTGCTAACCACTGGCGTTTATTCGGGAGCACAGTTCGGA
ACGGCTGTCATCCTGGTCACCAGTGGCTTCATCTTCGAATCCAGCATGGG
TTGGCCAGGGTTGTTCTACCTTTCCGGAGGTCTCAGCCTCGCTTGGGCGC
TGCTTTTCTTTTGGCAGGCCGCCAATGAACCGGTTACAGCCAGCAGGATC
AGCAAAGGCGAGGTGGAGTATATCGAAAGCCTTACGGGCAGCAACAGCTC
CAGTCAGTCTATGCCTGTGCCCTGGATGTCGATCTTTAGGTCGCCAGCCT
TTTACGGTCTGCTGGCAGCCCATTGTGGATTCACCTGGGGTTTCTACACG
CTGCTCACCGAAATGCCCACTTACATGAGCATGGTTCTGCAGCTAAATGT
CAAGTCCAATGCCTTCCTCTCCTCGCTGCCGTACTTTGCTATGGGCCTGC
TCTGCTTTGTGGTCAGTCCCATATCGGATTTGCTTATCAACAGAGGCACT
ATATCGATCACCACGGCTCGAAAGCTGTTTAATTCGATTGGACAGTGGGG
ACCGATGGCTTGTTTGATTGGACTGGGCTACATGACAGCCGATGAGAAAC
GTGGCATTCTTTTGCTGAACTGCATGGCATCATGCGGCTGTTCTTGTGGA
ATTCGATCATACATCGACTGTCGCCACTTGCCGCAGATCGATCCAATGGG
ATGC
UFO04827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8791-RA | 1840 | CG8791-RA | 95..1224 | 9..1125 | 5275 | 98.5 | Plus |
| CG8791-RB | 2292 | CG8791-RB | 581..1676 | 43..1125 | 5105 | 98.4 | Plus |
| CG8791-RC | 1811 | CG8791-RC | 100..1195 | 43..1125 | 5105 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7928357..7928813 | 251..707 | 2285 | 100 | Plus |
| 2R | 25286936 | 2R | 7928874..7929217 | 706..1049 | 1720 | 100 | Plus |
| 2R | 25286936 | 2R | 7928086..7928296 | 43..253 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:31:21 has no hits.
UFO04827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:49 Download gff for
UFO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8791-RA | 63..1138 | 1..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:59 Download gff for
UFO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8791-RA | 87..1162 | 1..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:46 Download gff for
UFO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8791-RA | 87..1162 | 1..1072 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:46 Download gff for
UFO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7928086..7928295 | 43..252 | 100 | -> | Plus |
| 2R | 7928359..7928813 | 253..707 | 100 | -> | Plus |
| 2R | 7928876..7929217 | 708..1049 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:59 Download gff for
UFO04827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3815591..3815800 | 43..252 | 100 | -> | Plus |
| arm_2R | 3815864..3816318 | 253..707 | 100 | -> | Plus |
| arm_2R | 3816381..3816722 | 708..1049 | 100 | == | Plus |
