UFO04828.5prime Sequence
1067 bp (945 high quality bases) assembled on 2009-06-30
> UFO04828.5prime
CAGTCGACATGATGCTGCTCCAGCTGGGCTGCGTGGCCCTCTTCTGCTGC
TTGGTTAGCGGTGCCTCGAATTTCCCTCCCGAACTGCCGCGCTGCCACAT
GGGCGACACCAGCTGCATCATCAACGTGTCGCACATGCTGATCAGACAGC
ACGCGAGGACCGGCTATCCGTCCGCTGGATTCCCCCAGGTGGAGCCCTTC
CTGATCAAGCGCTTCGACATCTCCGACGGACGCACTGGCTCCCTGAATCT
AAAGCTCAACTTCAGGGACGTGAATGTGGAGGGCCTGTCCAGTGTGAAGT
TCGACAGAGCCGTTGGCTTTGGCGCTGATCCTGCAACCAGCAAGTTTGAG
ATGTACGGATCCTTTCCCAAGATCGTGCTGAAGGGCAAGTACGTGGCGGA
TGGACGCATCCTGATCCTGCCGATTCGTGGCGATGGCGATGCCGAGATCG
TGTTGCACAATCCCAAGTTTTCGGTGAAATTCAAGCCGGGCACACAGCAG
CGCAATGGACGCACCTACCTGAGCGTGGATAAGCTCAAGGTTCTGGTGGA
GCCACAAAAGATGAACATTCGGCTGGAGAACCTCTTTAATGGCGACCAGG
CATTGGGCACCAATCTGAATCAGTTCCTCAACGACAACTGGACGGAGGTG
TGGAACGAGCTGCATCCCTCCATTCATGTGGCCATCGCCGAGATCATGAA
GAGCGTTCTCTCGCAGCTCTTCAAGCGCTTCGCCTACGAGGATTTATTCC
TCGAGAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATATCACACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGATTCTCACAATAAAAACGCCGCGCAC
GAGCGTCTGACAATCCAGATGAGTTCTGAGTCATACTGATCTATCACAGG
AGTCAGCGAGCTCGATATCAATACGCCCCGCTGCCACTCATCGCAGTATT
GTTTATTCATTAGCATCGCGACTGAAGCCATCCAAACGGCATGATGACCT
GATCGCACGCCACGACC
UFO04828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11852-RA | 1045 | CG11852-RA | 100..849 | 9..758 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25238200..25238446 | 314..560 | 1235 | 100 | Plus |
| 3R | 32079331 | 3R | 25237837..25238074 | 76..313 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 25238501..25238699 | 560..758 | 995 | 100 | Plus |
| 3R | 32079331 | 3R | 25237713..25237779 | 9..75 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:54:29 has no hits.
UFO04828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:51 Download gff for
UFO04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11852-RA | 85..843 | 1..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:28 Download gff for
UFO04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11852-RA | 96..854 | 1..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:52 Download gff for
UFO04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11852-RA | 96..854 | 1..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:52 Download gff for
UFO04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25237709..25237779 | 1..75 | 94 | -> | Plus |
| 3R | 25237837..25238074 | 76..313 | 100 | -> | Plus |
| 3R | 25238200..25238445 | 314..559 | 100 | -> | Plus |
| 3R | 25238501..25238704 | 560..764 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:28 Download gff for
UFO04828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21064223..21064426 | 560..764 | 98 | == | Plus |
| arm_3R | 21063431..21063501 | 1..75 | 94 | -> | Plus |
| arm_3R | 21063559..21063796 | 76..313 | 100 | -> | Plus |
| arm_3R | 21063922..21064167 | 314..559 | 100 | -> | Plus |
