UFO04831.5prime Sequence
1141 bp (1029 high quality bases) assembled on 2009-06-30
> UFO04831.5prime
CAGTCGACATGAGCCCCTCAATCAGCGCGGAAGACAAGCTAGACTATGTA
AAGAGCAAGATTGGCGAGTATCCGAACTTCCCAAAGGAGGGCATTCTGTT
CCGTGACATATTCGGAGCCCTCACCGATCCGAAGGCATGTGTGTACTTGC
GCGATTTGCTTGTTGATCACATCCGGGAAAGTGCTCCCGAGGCGGAGGTC
ATCGTGGGACTGGACTCGCGGGGCTTCCTCTTTAATCTCCTCATAGCCAC
CGAGCTGGGCCTGGGATGTGCTCCGATTCGCAAGAAGGGCAAGCTGGCGG
GAGAAGTGGTTTCCGTGGAATACAAACTGGAGTACGGTATTGACACCTTT
GAGCTGCAAAAATCCGCCATCAAGCCCGGCCAAAAAGTCGTTGTCGTTGA
CGATCTACTAGCCACAGGTGGTTCCCTGGTGGCCGCCACTGAACTCATCG
GCAAGGTGGGTGGCGTTGTCGTGGAGAGCCTGGTGGTCATGGAACTAGTT
GGACTGGAGGGTCGCAAAAGGCTGGATGGAAAAGTGCATTCCCTCATTAA
GTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGCGAGAGT
GTCCATATTGCCACGTTAATCAACTGTGAACTCACCCAGGGATGGCTGAA
CGAAAACATATTCTCAATACCCTTTAGGAATAGCCAGCTTCACGTACACG
CCAATCTTGCAATAATATGTGTAAACTGCCGATCGTCTGCAATCCTCAGC
GTTAACCGTCAGTGTCCATGGAAACGGTACAGGTTAACCTA
UFO04831.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aprt-RD | 924 | CG18315-RD | 235..780 | 9..554 | 2730 | 100 | Plus |
| Aprt-RC | 894 | CG18315-RC | 108..653 | 9..554 | 2730 | 100 | Plus |
| Aprt-RA | 797 | CG18315-RA | 108..653 | 9..554 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1884322..1884561 | 342..103 | 1200 | 100 | Minus |
| 3L | 28110227 | 3L | 1884036..1884248 | 554..342 | 1065 | 100 | Minus |
| 3L | 28110227 | 3L | 1884691..1884785 | 103..9 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:21 has no hits.
UFO04831.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:52 Download gff for
UFO04831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aprt-RA | 92..654 | 2..562 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:39 Download gff for
UFO04831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aprt-RA | 92..654 | 2..562 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:10 Download gff for
UFO04831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aprt-RA | 99..661 | 2..562 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:10 Download gff for
UFO04831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1884323..1884560 | 104..341 | 100 | <- | Minus |
| 3L | 1884691..1884791 | 2..103 | 96 | | Minus |
| 3L | 1884036..1884248 | 342..554 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:39 Download gff for
UFO04831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1884323..1884560 | 104..341 | 100 | <- | Minus |
| arm_3L | 1884691..1884791 | 2..103 | 96 | | Minus |
| arm_3L | 1884036..1884248 | 342..554 | 100 | <- | Minus |
