UFO04835.5prime Sequence
1138 bp (1026 high quality bases) assembled on 2009-06-30
> UFO04835.5prime
CAGTCGACATGTCGAATAGGGAACTGCAACTGAATTCGGGCATGAAGTGC
GCCAAGTACATGCTCATCATCGTGAGCTTCATGTTTGCGCTGACCGCCAT
CCTCCTGATTATGGTTGGAACTACGATCCAGACCATCTTCGGCGACTTCA
GCCTCTTCATCGATGGACACTTCTCGTCGCCACCGGCACTCCTCATTGCC
ATCGGATTCATTCTGATCGCAGTGGCCGCACTGGGGGCCTATGGAGCCGT
CAAGGAGAGTGTGATGGTCATTAATCTGTACGGAGTGTGCCTTTTCCTGG
TGTTCATCCTCGAGGTTTCTGCCGCCATCGCCGCCTTTGTGATGCAATCG
CAGGTGAGGGGCATGCTGATCCGAACCATGAACCAGGCCCTGGCTGAGTA
TGAACACGATCCCTACGTGGAATCTGGAGTGGACTTCATGCAATCTATGC
TAGAGTGTTGCGGAGTTAATGAGCCGGAGGACTGGAAGGACTACCTATCC
GCCAATGTGAACTTCACTCTGGGAGTGGATGACGTGGTGGTGCCCAACTC
ATGCTGCGGCAACCAACCAACAAGTCTGAACGACTCCACCCAGATGACCT
GTATGGAGACCTACGACTACGGCTGCTTCCGCAAGATGAACTTCATTGTG
TCGCAGAGCGCCATGCTGATTGCCACCGGAGCCACCACTGTGGCCTTTGT
CCAGCTTCTCGGCGTGCTCTGCGCCTTTATGCTGGCCAAGACGCTGCGCC
GCAACAAGTCCATCCGCGAGGCACGCCGCTGGCAGCTGCAGCAGAGCCTC
GGCGTCCTCATCTCCGGCGGAAAGATGGCACCGCCCCAGAATTCCGCTGT
CACCGGCTATCAGCAGTTGGATAACGGAGAGCAGGCTCCCACGAACCCTA
CACCTACACGCCCCAGAGCCCCAGCGTTAACGCAAGCTTTCTAGACCATT
CGTTTGGCGCCGCGGGCCCAGGTAAGTGTCATAATCATATCATAATCATA
ATCATAATCACCACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
ATTCTCACCAATAAAACGCCCCCGGCGCCACCCGAACGTCTGGACCATCC
GATGGAGTTCTGGAGGTCATACTGGATCTATCACACAG
UFO04835.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp29Fb-RC | 1230 | CG9496-RC | 162..1085 | 9..931 | 4595 | 99.9 | Plus |
| Tsp29Fb-RA | 1159 | CG9496-RA | 91..1014 | 9..931 | 4595 | 99.9 | Plus |
| Tsp29Fb-RB | 1116 | CG9496-RB | 48..971 | 9..931 | 4595 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8939115..8939598 | 449..931 | 2370 | 99.8 | Plus |
| 2L | 23513712 | 2L | 8938568..8938757 | 89..278 | 950 | 100 | Plus |
| 2L | 23513712 | 2L | 8938856..8939027 | 278..449 | 860 | 100 | Plus |
| 2L | 23513712 | 2L | 8937551..8937635 | 9..93 | 410 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:49:40 has no hits.
UFO04835.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:47 Download gff for
UFO04835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp29Fb-RC | 147..1082 | 1..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:20 Download gff for
UFO04835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp29Fb-RB | 41..976 | 1..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:04 Download gff for
UFO04835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp29Fb-RB | 41..976 | 1..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:04 Download gff for
UFO04835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8938857..8939027 | 279..449 | 100 | -> | Plus |
| 2L | 8937544..8937631 | 1..89 | 96 | -> | Plus |
| 2L | 8938569..8938757 | 90..278 | 100 | -> | Plus |
| 2L | 8939116..8939598 | 450..931 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:20 Download gff for
UFO04835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8938857..8939027 | 279..449 | 100 | -> | Plus |
| arm_2L | 8937544..8937631 | 1..89 | 96 | -> | Plus |
| arm_2L | 8938569..8938757 | 90..278 | 100 | -> | Plus |
| arm_2L | 8939116..8939598 | 450..931 | 99 | == | Plus |
