UFO04837.5prime Sequence
1090 bp (987 high quality bases) assembled on 2009-06-30
> UFO04837.5prime
CAGTCGACATGAGAGCCCTCCTAGGAATCTGTGTCCTGGCACTAGTCACT
CCAGCTGTCCTGGGTCGCACCATGGATCGCTGCTCACTGGCGCGCGAGAT
GGCCAATATGGGTGTTTCTCGTGACCAGTTGTCCAAGTGGGCGTGCATTG
CAGAGCACGAGAGCTCCTACCGCACCGGAGTGGTGGGGCCTCCCAACACC
GATGGATCCAACGACTATGGCATTTTCCAGATCAACGACATGTACTGGTG
CCAGCCGTCCAGTGGAAAGTTCTCCCACAATGGCTGCGATGTGAGTTGCA
ACGCTCTCTTGACCGATGACATCAAAAGTTCCGTAAGATGTGCCCTAAAG
GTCCTGGGTCAACAGGGCTGGTCAGCCTGGTCCACCTGGCACTACTGCAG
TGGATACCTGCCCCCGATCGATGATTGCTTTGTTGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATA
ATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCA
CGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGCTGAGACGAAAAC
ATATTCTCATAACCCTTTAGGAATAGGCCAGGTTTCACGTACACGCACAT
CTTGCGATATATGTGTAGACTGCGAATCGTCGTGTATCACTTCGAGCGAT
GAAACGGTTCAGTTGCTCATGAACGTGTACAGTGAAACTATCCCATATAC
AGTTCACGTCTTCATGGCATCGATCGGATGACTCGTCAAG
UFO04837.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LysX-RA | 564 | CG9120-RA | 3..433 | 4..434 | 2140 | 99.8 | Plus |
| LysD-RA | 480 | CG9118-RA | 71..438 | 63..430 | 625 | 78.3 | Plus |
| LysB-RB | 611 | CG1179-RB | 75..442 | 63..430 | 625 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1194870..1195300 | 434..4 | 2140 | 99.8 | Minus |
| 3L | 28110227 | 3L | 1207445..1207812 | 63..430 | 625 | 78 | Plus |
| 3L | 28110227 | 3L | 1210759..1211126 | 430..63 | 625 | 78 | Minus |
| 3L | 28110227 | 3L | 1213003..1213370 | 63..430 | 595 | 77.4 | Plus |
| 3L | 28110227 | 3L | 1227826..1228190 | 63..430 | 560 | 77.4 | Plus |
| 3L | 28110227 | 3L | 1210536..1210724 | 63..251 | 420 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:07:06 has no hits.
UFO04837.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:56 Download gff for
UFO04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysX-RA | 1..438 | 2..442 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:06 Download gff for
UFO04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysX-RA | 1..438 | 2..442 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:17 Download gff for
UFO04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LysX-RA | 1..438 | 2..442 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:17 Download gff for
UFO04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1194870..1195302 | 1..434 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:06 Download gff for
UFO04837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1194870..1195302 | 1..434 | 99 | | Minus |
