UFO04839.5prime Sequence
1144 bp (1040 high quality bases) assembled on 2009-06-30
> UFO04839.5prime
CAGTCGACATGCTGTCCTACATAAAGCGCAAGCTCTCCGAATCCGACAGC
GGCGTCAGTTCGGTCGCAACTGTGACGTCGTCGTGCGGCGGCGATAGTGG
GAGAGCGGGCGGAACGGGCAGCAGTGAAAGCGGTACGGGCAGCAGCAGCG
CCAGTATCAGCGGACGCAGCCAGAACGCCGACGAGTTAGTGCGCAAAACG
AGCCAGATGTCGATGGATGATGAGGCCATTGCCTTCGGGGAGGACGCACT
GCTCCATGAACTGGGCTACAAGAATCAGACGGAACTGCAGGAAACCATCT
ACGATCTGTTGCGCGGCATTCGCGATCCCGAGAAGCCGTGCACTTTGGAG
GACCTCAACGTTGTCTACGAGGATGGAATCTTTGTGATGCCGCCCACGCG
CTCCAATGTCTCAGTTGTTCGCATCGAGTTTAACCCCACAGTGCCACATT
GCTCGTTGGCCACGCTTATTGGACTCTGTATACGCGTGAAAGTAGAACGC
GGACTTCCGCACAACATAAAGCTAGACATATACATCAAGAAGGGAGCGCA
TCAAACCGAGGAAGAGATTAACAAGCAAATCAATGACAAGGAGCGCATCG
CTGCGGCCATGGAGAACCCCAATCTGAGGGATTTGGTCGAGAACTGCATC
AAGGATGAGGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCACAGGAGTCCAAGCGAGCTCGATATCAATTACGC
CCCGCCCTGCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGTAGCCATCACAAACGGCATGATGATCTGATCGCCAGCGCATCAG
CACCTGTCGCCTTGCGTATATATTTGCCCATGTGAAACGGGGGCGAAGAA
GTTGTCATATGCCACGTTTATCAACTGTGCACTCACCAGATGCTGAAACG
AAAAACTATTCTATACGTAGAATTGGCAGGTTCACGTACACGCC
UFO04839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30152-RC | 1473 | CG30152-RC | 698..1353 | 7..662 | 3280 | 100 | Plus |
| CG30152-RB | 1895 | CG30152-RB | 179..834 | 7..662 | 3280 | 100 | Plus |
| CG30152-RA | 954 | CG30152-RA | 179..834 | 7..662 | 3280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20671382..20671678 | 7..303 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 20672119..20672273 | 417..571 | 760 | 99.4 | Plus |
| 2R | 25286936 | 2R | 20671745..20671860 | 303..418 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 20672340..20672434 | 568..662 | 475 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 660..724 | 180..117 | 151 | 72.3 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..693 | 161..99 | 125 | 70.3 | Minus |
UFO04839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:56 Download gff for
UFO04839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30152-RA | 176..844 | 1..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:44 Download gff for
UFO04839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30152-RA | 175..843 | 1..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:05 Download gff for
UFO04839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30152-RA | 175..843 | 1..673 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:05 Download gff for
UFO04839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20672340..20672443 | 568..673 | 96 | == | Plus |
| 2R | 20671746..20671858 | 304..416 | 100 | -> | Plus |
| 2R | 20672119..20672269 | 417..567 | 100 | -> | Plus |
| 2R | 20671378..20671678 | 1..303 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:44 Download gff for
UFO04839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16558883..16559183 | 1..303 | 99 | -> | Plus |
| arm_2R | 16559251..16559363 | 304..416 | 100 | -> | Plus |
| arm_2R | 16559624..16559774 | 417..567 | 100 | -> | Plus |
| arm_2R | 16559845..16559948 | 568..673 | 96 | == | Plus |
