UFO04840.5prime Sequence
197 bp (159 high quality bases) assembled on 2009-06-30
> UFO04840.5prime
CAGTCGACATGTCACAGGTTTACTTGCTGCCGGTGCTCACGTTCCTGATA
TTCCAGGTCACCTTTCTTGGCACGTACATCTTCGCCGTGCTGGAGGGGCA
TGTGGTGCCCACGGTTCCCTACATCAGCGATGCGGCCACCTACTCGCCGG
AAGCTGTGTGTTCGGGCAGCTTATCAACATAGCACCGTTCTTGTTGA
UFO04840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4025-RA | 1240 | CG4025-RA | 118..302 | 9..191 | 860 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2077218..2077327 | 74..182 | 500 | 99.1 | Plus |
| X | 23542271 | X | 2077083..2077150 | 9..76 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:50:00 has no hits.
UFO04840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:23 Download gff for
UFO04840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4025-RA | 94..291 | 1..196 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:32 Download gff for
UFO04840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4025-RA | 110..307 | 1..196 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:13 Download gff for
UFO04840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4025-RA | 110..307 | 1..196 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:13 Download gff for
UFO04840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2077075..2077147 | 1..73 | 94 | -> | Plus |
| X | 2077218..2077340 | 74..196 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:32 Download gff for
UFO04840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1971108..1971180 | 1..73 | 94 | -> | Plus |
| arm_X | 1971251..1971373 | 74..196 | 95 | | Plus |
