UFO04842.5prime Sequence
1136 bp (1044 high quality bases) assembled on 2009-06-30
> UFO04842.5prime
CAGTCGACATGAAACTCGCTCTGCTTGCCATCCTGATCGTTTCCTTGGCC
CTGGCCCAGGCCACCGACTATTGTTCGTCGGACATCTGCAACGGTGGCTC
CCACATCGCCTGTGGGCATAGCAACTGGTGGGACAGTAGCTGTCCCGGCG
ATGCCGAGCTGATCGACATCAACGATGACTACAAGTGGGTCTTTGTCCAC
TCGCACAACGACAAGAGGAACTACATTGCCGGTGGCTACGATTCCAATCA
CAATGCCGCCTGCCGTATGGCCACCATGGAGTGGGACGATGAGCTGGCCT
ATCTGGCCTCCCTGAATGTGCGCCAGTGCAACATGGTGCACGATAGCTGC
CACAACACCGACGCCTTCAAGTACTCCGGCCAGAATCTGGCATGGCAGGC
CTACTCCGGCGACCTGCCCGACATGGGCTACATCCTGGACAACAGCGTGC
AGATGTGGTTCGATGAGGTGCACAACTCCAACGCCGGTATTATTGCCGGC
GGATACCCATCCGGATATAACGGACCTGCCATTGGCCACTTCACCGTGAT
GATGTCGGAGAGGAACACCCGCTTGGGATGTGCTGCTGCTCGGTACAATC
GCGATGGATGGAACCAAGTGCTGGTGGCCTGCAACTATGCTACCACCAAT
ATGATCGGACGCCAGATCTACTCCAGCTGTGACTGGGGAGCACAGGGCTG
CGGATCGGGCACCAATGGCGAGTTTGGTAACCTCTGCTCAACATCCGAGT
GGTACGACGTGAACAGCTGGGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCCAGTACTGTTGTAATTCATTAA
GCATTCTGCCGACTGAGCCATCAAAACCGCATGATGACCCTGAATCGCAG
CGGCATCAGACTTGTTCGCCTTCGCTAAATTTGCCA
UFO04842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r2-RA | 849 | CG9540-RA | 47..808 | 9..770 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14783489..14784006 | 526..9 | 2590 | 100 | Minus |
| X | 23542271 | X | 14783003..14783246 | 770..527 | 1220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:24:39 has no hits.
UFO04842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:57 Download gff for
UFO04842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-RA | 29..805 | 1..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:11 Download gff for
UFO04842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-RA | 39..815 | 1..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:33 Download gff for
UFO04842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r2-RA | 39..815 | 1..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:33 Download gff for
UFO04842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14782998..14783246 | 527..779 | 97 | <- | Minus |
| X | 14783489..14784013 | 1..526 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:11 Download gff for
UFO04842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14677031..14677279 | 527..779 | 97 | <- | Minus |
| arm_X | 14677522..14678046 | 1..526 | 99 | | Minus |
