UFO04843.5prime Sequence
1135 bp (1045 high quality bases) assembled on 2009-06-30
> UFO04843.5prime
CAGTCGACATGTGCTCTCCGTGCGGTCCTTGTAGTCCATGCGATCCCTGC
TGCGGTCCCTTCGAGTGCTCACCCAAGTGCTACAATGCCGCCCAATTGGA
GGCCTTGCCACAATGTGCTCCACGTATTCCACCACCCTTCCCCAAATGCA
TCACCGTGCAGCAACCACCACGCATGATCTGCAAGAAACGCGTTGTGTTC
ACGGAGAAGATTGTGCCGGAGCCAATGGTGGTTAACCGATGCAGGCAGAT
CACCATTCCAAAGGTCGTTGATGCCACGCGGGTGATCAAGGTGCCCAAGC
TGATTTGGGTGTCGCAGATGGTGCGAGAACCCAGAGTAATCTACTACCCC
TCGATGATCCCCGACCCCTATGTGGTGTGCTATCCCAAGCGCGTCTGCGA
ACCACGTGAGGTGTGTCAGTCGATCCTCTGCCAGCCGAAGCCCCAAACCA
TCGACATTCCGCCGCCGAGGGAGTACTGCTGCTATCCAAATGGACCCATC
AACTACAAGCCCAGTGCAGCGTGCCCACCCTGCCCCATTGGACCATGTGC
TCCTGGAGGACCCTGCTGTCCGCTGCCCTGCTTCTCCACAAACCAATACC
CAGTGGCTGAGGGCAGATGCGGACCATGTGGACCCTGTGGACCCGGATGC
GGACCTTGCGGACCCTGCGGACCTTGGGGACCAGGATGCGGTCCTTGCGG
ACCCTGTGGACCCTGCGGACCCTTCGGACCAGGCTGTGGTCCATGCGGAC
CGTGTGGACCCTGCGGACCTGGCCCTTGTGGCTTCGGTCCTTGCGGACCA
TGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGGCGGCA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGATTT
ATCAACAGGAGTCCAGGGGAGCTCGATATCAAATTACGCCCCGCCCTGCC
CTCCATCGAGTACTGGTTGACTTCATTAAGCATTCTGGCCGACTGAAGCC
ATCAAACGGCATGATGACCTGAATTGCCCATGCAT
UFO04843.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst98Cb-RA | 1066 | CG18396-RA | 118..912 | 9..803 | 3975 | 100 | Plus |
| Mst98Ca-RA | 1319 | CG11719-RA | 120..774 | 7..661 | 2900 | 96.2 | Plus |
| Mst98Cb-RA | 1066 | CG18396-RA | 757..830 | 696..769 | 235 | 87.8 | Plus |
| Mst98Cb-RA | 1066 | CG18396-RA | 805..878 | 648..721 | 235 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28292915..28293709 | 9..803 | 3975 | 100 | Plus |
| 3R | 32079331 | 3R | 28291457..28292111 | 7..661 | 2900 | 96.2 | Plus |
| 3R | 32079331 | 3R | 28293554..28293627 | 696..769 | 235 | 87.8 | Plus |
| 3R | 32079331 | 3R | 28293602..28293675 | 648..721 | 235 | 87.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:04 has no hits.
UFO04843.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:58 Download gff for
UFO04843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Cb-RA | 113..913 | 9..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:37 Download gff for
UFO04843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Cb-RA | 118..918 | 9..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:15 Download gff for
UFO04843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Cb-RA | 118..918 | 9..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:15 Download gff for
UFO04843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28292915..28293715 | 9..810 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:37 Download gff for
UFO04843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24118637..24119437 | 9..810 | 99 | == | Plus |
