UFO04844.5prime Sequence
1081 bp (1006 high quality bases) assembled on 2009-06-30
> UFO04844.5prime
CAGTCGACATGTCGAAAATTACTCTCATTTTTGCTATTCTCTGCCTTTGC
GTGGCTGTTCAGGCTCAAACTCGTGAACAAGAAATTTGCCGTCAAGAAAA
CGAAACTTGCCGTCGAAATGAACGGAGATTGGGAGTTCAAAATGATGTTT
CGACCACATTTAATAATCACTGCCGCCGCCAGTCAGGCATTCGAAACTGG
CGAAATGTCTCTCGTTGCGAATTGTCTCTGGCTACTTGTCGATTGACACT
CGAGCGTTGTGCTGTTATAAACTGCAAAAATGTGAGAAACAGCATTGATG
GTGGGGTCACCGCTCGCCCTCCAACTTCAAGGAGGACAACCCGGCGAATT
CCTGACACCCGACGACCTCGAACTACTCGTAGGACCCCAACTACCCGTCG
TGCTCCAACTACTAGATCTTCTCGTAGAACTACACGTCGTCGTGCTCCAA
CAACTAGAACTACTCGAAGAACTACACGTCGTCGTGCGCCAACTACTAGA
ACTACGACTCGTCGACCTACTGAAGAAGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGC
CCATGTGAAACGGGGGCGAGAGTGTCCATATTGCCACGTTTAAATCAAAC
TGTGAAACTCACCAGGATGCTGAACGAAACATATCTCATAACCCTTTAGA
ATAGCAGTTCACGTACACGCACATCTGCCAATTATTGTAGACTTGCGGAT
CGTCTGATTCATCGAGGGAGAAACGTTGCAT
UFO04844.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eig71Ec-RA | 639 | CG7608-RA | 38..558 | 7..527 | 2605 | 100 | Plus |
| Eig71Ec-RA | 639 | CG7608-RA | 427..494 | 438..505 | 250 | 91.2 | Plus |
| Eig71Ec-RA | 639 | CG7608-RA | 469..536 | 396..463 | 250 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15651560..15651843 | 527..244 | 1420 | 100 | Minus |
| 3L | 28110227 | 3L | 15651922..15652138 | 243..27 | 1070 | 99.5 | Minus |
| 3L | 28110227 | 3L | 15651582..15651649 | 463..396 | 250 | 91.2 | Minus |
| 3L | 28110227 | 3L | 15651624..15651691 | 505..438 | 250 | 91.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:29:06 has no hits.
UFO04844.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:59 Download gff for
UFO04844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ec-RA | 27..566 | 1..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:27 Download gff for
UFO04844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ec-RA | 30..569 | 1..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:24 Download gff for
UFO04844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ec-RA | 30..569 | 1..541 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:24 Download gff for
UFO04844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15651560..15651843 | 244..527 | 100 | <- | Minus |
| 3L | 15651922..15652131 | 34..243 | 100 | <- | Minus |
| 3L | 15652191..15652225 | 1..33 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:27 Download gff for
UFO04844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15644660..15644943 | 244..527 | 100 | <- | Minus |
| arm_3L | 15645022..15645231 | 34..243 | 100 | <- | Minus |
| arm_3L | 15645291..15645325 | 1..33 | 91 | | Minus |
