UFO04846.5prime Sequence
1111 bp (1001 high quality bases) assembled on 2009-06-30
> UFO04846.5prime
CAGTCGACATGTACAAACTTGTCTGTGTAGTTTTGGCCCTGTTTGCAGTT
GCCTACGCGGTTCCCTCGACTTATGATACCGAGCACGTGTGGAAGGCTGG
TAACCTGTCCTACGTTATTCCCTATAATGCCGTTGTGGGTGGCTTCGATC
CCTACGGATTTACCACCTATGTTGGTCGTGTTAAGTACTCCAATAGCATC
CTGCCGGCTCGAGTTGTTGCGGAAACTGGTACTGCTTACTTCAATACGGA
AACCACATCCTCGAAGCTCCTCGTCTACGACATCCTAGTGGCTGAGCGGG
ATGTAAATTACGTGTGGGTCAGGAGCTTCGATGGATTCTATGAAAAGGGA
GCCGTTGCCGTGGGCACGACGGTCAAAAATGAGCGGGTGTTCTGCTGCCG
TGCTAAGACCGATGGAGGCATCCTAATCGGCACCCTGCTCCTTAGCAGCC
AGAAGGTGTGCATCATCAAGCACGAGAGCTTGGCCCTGCGAAAGTTCGAC
AAATATGAAGTTCTGGTGGCCCAGCCTAAAGGCAATGGAACATACTACGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGT
CGCTTGCGTATATATTTGCCCATGGTGAAACGGGGGCGAGAGTGTCCATA
TTGGCCACGTTAATCAAACTGGTGAAACTCACCCAGGATTGCTGAACGAA
AAACATATCTCATAATCCTTTAGGAAATAGCCAGTTTTCACGGTACCCGC
CCAATCTGCAATATATTGTGTAAAACTGCGATCGTCTGAATCATTCAGCG
TAACGTTCAGT
UFO04846.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5506-RA | 661 | CG5506-RA | 32..571 | 9..548 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17883739..17884212 | 548..75 | 2370 | 100 | Minus |
| 3L | 28110227 | 3L | 17884279..17884345 | 75..9 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:53 has no hits.
UFO04846.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:53 Download gff for
UFO04846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5506-RA | 22..575 | 1..556 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:01 Download gff for
UFO04846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5506-RA | 24..577 | 1..556 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:24 Download gff for
UFO04846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5506-RA | 24..577 | 1..556 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:24 Download gff for
UFO04846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17883739..17884211 | 76..548 | 100 | <- | Minus |
| 3L | 17884279..17884352 | 1..75 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:01 Download gff for
UFO04846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17876839..17877311 | 76..548 | 100 | <- | Minus |
| arm_3L | 17877379..17877452 | 1..75 | 96 | | Minus |
