UFO04848.5prime Sequence
1097 bp (981 high quality bases) assembled on 2009-06-30
> UFO04848.5prime
CAGTCGACATGAACATCCTGCTGCGCTTAATCGTCTTCGCCCTGGATCCT
CTGGGTCTGGGCCGACGTTTCCTCATCCGGCCTGCCGTGAATCTGGGCTG
GAACGTCTACGATCGCGTGCGCAGCAAGGCGGACGAGAAGGTGGGCACGG
TGCGAGAGCTGGTCCTCCGGCTGGGCCTCATCGCCTTCGCCGTGGTGCTC
ATCATCTGGCTGGCGGTCTTCATGTACGCCGCCTTCTACTACGTCTACAT
GCCGGCCATATCGCACACCCGACCCGTTCACATGCAGTTCAAAACCTGCC
TGGAGACCAGCACGCCCTGCACCTTTCCGCACGCGCACGTCTCGCTGACG
AAGAAGCAGCAACTCCTGATGGTTGGCCAGGCGTACAAGGTGATCGTGAA
CATCGACATGCCGGAGTCGCCGCAAAATCTCGAGCTGGGCATGTTCATGG
TGTGCGCCGAGATGAGGGACTACGACTCGATGCTGAGGGGTCACTCCTGT
CGGTCTGCCATGATGCGCTATCGTTCGCCGCTGATCCGCATGATCTCCAC
GTGGGTCCTGAGTCCGCTCTATGTGCTTGGCTGGAAAGAGGAGTTCCAGC
AGGTGCCAGTTGAGATATTCTCACGGTATCTGGAGGAGCGACAACATCCC
ATAACGGATGTCTACGTGGAGATACAGTCGCAGAAGATCCAGTTCTACAC
GGTCACCCTGCACATAGTTGCCGATTTTACCGGTCTGCGGTACATCATGT
TCAACTGGCCCGTACTGTCGGCCATAGTGGCCATTAGCACCAATCTGTTC
TTTATACTGGTCGTCTTTCTGCTCAGCTGGTACCACTGGTCCGACGCCAA
GTGGCTGCATAGCGTGCAAATCAAGTACGCCCGGCTCACGAAGTCGCTCG
AGCCCCGGCGTAATACACTCCAAAGCGAGCAGCCTGCGCGACGACGACGA
CGACCTGGTGGCCTAACAGTGATAAGTCCGATATTTGCGGACGTGGGGCG
GCGACACGCTGACGACGTCGATGACGATGACTTGGTGCTGTCAAGAATTC
CCGCCATGGGCGAGCGCGAATCGCTCGATGGCCCTGGCGTAAGCGTT
UFO04848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Seipin-RA | 2045 | CG9904-RA | 511..1594 | 8..1096 | 5005 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2620825..2621312 | 293..780 | 2395 | 99.4 | Plus |
| X | 23542271 | X | 2620309..2620593 | 8..292 | 1380 | 98.9 | Plus |
| X | 23542271 | X | 2621378..2621675 | 780..1080 | 1045 | 95 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:54:37 has no hits.
UFO04848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:54 Download gff for
UFO04848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9904-RA | 503..1593 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:35 Download gff for
UFO04848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Seipin-RA | 504..1594 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:57 Download gff for
UFO04848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Seipin-RA | 504..1594 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:57 Download gff for
UFO04848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2620302..2620593 | 1..292 | 97 | -> | Plus |
| X | 2620825..2621312 | 293..780 | 99 | -> | Plus |
| X | 2621379..2621689 | 781..1097 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:35 Download gff for
UFO04848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2514335..2514626 | 1..292 | 97 | -> | Plus |
| arm_X | 2514858..2515345 | 293..780 | 99 | -> | Plus |
| arm_X | 2515412..2515722 | 781..1097 | 94 | | Plus |
