UFO04849.5prime Sequence
1093 bp (994 high quality bases) assembled on 2009-06-30
> UFO04849.5prime
CAGTCGACATGCTGCGTCGTCGCCCGAGCCTAATGGAATATCCGGCTTCC
AACGGATTCCTGCCACTTGCCAATGCCATTATTCAGGGCGAGATGTGCAT
CATTGACTTGCTGCTCTCGGCCGGTTGCAGCGTCCACATTGGAGATCCGG
GAAGCGGCCGGACCCCGCTGCACCTGGCTTTTTACTACGGTCACCTGCCG
TCCGCTCGCATTCTGCTGAACAAGAAGGCCCGCCTGGAGGCGACGGACAG
TAACGGCATGACTCCCGCCCACTGCGCCGTTGATGCCAATCAACTGGAAA
TAGTCAAGTTCGCTCTCGAAGCGGGAGCGAATGCTGAGGCCAGAGACGTC
TGCGGCTGGACCCTTCTTATGCGCGCAGTGGTTATGAACGCTAGCATGGA
GCTCATCAAAGTCCTTGTTACGCACGGCGCAGACTTGGCGGCTTTGGATG
GTGTTGGCAAAACTTGCACTGACTTGGCGAAACTTTATCACAGACAGGAG
GCAAAGGATTACTTTGACGAGGTGCAAAAGTTTAGGCTGGAGAAATCAGT
CGCGACCGCAGACGCAGTGACTGCAATAACGAGGTACACCAAAGAAGTTG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAG
CCATCACAAACGGCATGATGACCTGATCGCCAGCGGCATCAGCACCTGTC
GCTTGCGTATATATTGCCCATGGTGAACGGGGCGAGAGTGTCCATATGGC
CACGTTTAATCAAACTGTGAAACTCCACCCAGGATGCTGAACGAAAAAAC
ATATTTCTCAATAACCGTCGAATAGCAGTTCACCCTTAACTCA
UFO04849.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9766-RC | 1502 | CG9766-RC | 565..1155 | 9..599 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4269568..4269792 | 599..375 | 1125 | 100 | Minus |
| 3R | 32079331 | 3R | 4269848..4270052 | 378..174 | 1025 | 100 | Minus |
| 3R | 32079331 | 3R | 4270109..4270273 | 173..9 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:09 has no hits.
UFO04849.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:00 Download gff for
UFO04849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9766-RC | 428..1020 | 6..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:08 Download gff for
UFO04849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9766-RB | 245..837 | 6..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:19 Download gff for
UFO04849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9766-RC | 563..1155 | 6..599 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:19 Download gff for
UFO04849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4269568..4269788 | 379..599 | 100 | <- | Minus |
| 3R | 4269848..4270052 | 174..378 | 100 | <- | Minus |
| 3R | 4270109..4270275 | 6..173 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:08 Download gff for
UFO04849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 95290..95510 | 379..599 | 100 | <- | Minus |
| arm_3R | 95570..95774 | 174..378 | 100 | <- | Minus |
| arm_3R | 95831..95997 | 6..173 | 99 | | Minus |
