UFO04850.5prime Sequence
1142 bp (1043 high quality bases) assembled on 2009-06-30
> UFO04850.5prime
CAGTCGACATGGATTGCGGCGGCGTTTTTGTGAAATATGTGCTGTTCATA
TTCAACATACTGTTTGTGATATGCGGCATTTTGCTTATCACCTTCGGCTC
TATCATGGTGTCCACCATAAAGGACTTCTCGGGCGTCGGCGAGACCTTCA
CGGCCAACAGCGTGGCCATCATCATCCTGGTCCTTGGCTGCGTAGTCTTC
CTGGTAGCCTTCATGGGATGCTGCGGCGCCATACGCGAGAATTCCTGTGC
TCTGACCTCGTACTCTGTGGTCATGCTGGTGCTGCTGGTTAGTCAGCTAG
CTCTCATTATCTACGTGTGGGTGGACCATGTGCAGATACAGCAATCTTTG
GAGAAGATCGTCCAGACCATATGGGATCAACGCAAGACCGATGCCCTCCT
CATGGACACACTGCAGCGATCGTTCAAGTGCTGCGGCTTGAACGGCTTCG
CTGATTACGGCATTACGTATCCCGCCTCCTGCTGCGACTCGCCCTCCAAT
GGAACCTGCGCACTAACCCAAGTCATGACGCGATCCAGTTGCCTGAAGGC
CGTTGATTCCTTCTGGGACACCAACGTGAGCATCATCAAGTACGCTGGCC
TGGGTGTGACTGCTGTTGAGCTTGTGGCCTTCATTTTCGCCTGCTGCCTG
GCCAATCAGACCCGCAACTCGCAGAGACGCCAGAACTACGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACTGATCGCAGCGGCATCAGCACTTGTCGCTTGGCGTATA
ATATTTGGCCATGGGTGAACGGGGCGGAAGAAGTGGTCCATATTGGCAGG
TTAATCAACTGGTGACTCACCAGGATGGGCTGAACGAAACAT
UFO04850.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ed-RB | 1248 | CG12846-RB | 89..769 | 9..689 | 3345 | 99.4 | Plus |
| Tsp42Ed-RA | 886 | CG12846-RA | 89..769 | 9..689 | 3345 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7010103..7010301 | 620..422 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 7010663..7010855 | 260..68 | 920 | 98.4 | Minus |
| 2R | 25286936 | 2R | 7010432..7010594 | 422..260 | 800 | 99.4 | Minus |
| 2R | 25286936 | 2R | 7009977..7010047 | 689..619 | 355 | 100 | Minus |
| 2R | 25286936 | 2R | 7011592..7011651 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:29:15 has no hits.
UFO04850.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:02 Download gff for
UFO04850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ed-RA | 199..887 | 1..693 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:33 Download gff for
UFO04850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ed-RA | 84..772 | 1..693 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:30 Download gff for
UFO04850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ed-RA | 84..772 | 1..693 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:30 Download gff for
UFO04850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7009973..7010045 | 621..693 | 97 | <- | Minus |
| 2R | 7010103..7010300 | 423..620 | 100 | <- | Minus |
| 2R | 7010432..7010593 | 261..422 | 99 | <- | Minus |
| 2R | 7010663..7010854 | 69..260 | 98 | <- | Minus |
| 2R | 7011592..7011656 | 1..68 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:33 Download gff for
UFO04850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2898168..2898359 | 69..260 | 98 | <- | Minus |
| arm_2R | 2899097..2899161 | 1..68 | 95 | | Minus |
| arm_2R | 2897478..2897550 | 621..693 | 97 | <- | Minus |
| arm_2R | 2897608..2897805 | 423..620 | 100 | <- | Minus |
| arm_2R | 2897937..2898098 | 261..422 | 99 | <- | Minus |
