UFO04852.5prime Sequence
1101 bp (991 high quality bases) assembled on 2009-06-30
> UFO04852.5prime
CAGTCGACATGTTCGATTTCAATTTGGAATTTGCGCGTGGAGGTGCCCGT
TTCACCAGCGAACTTTTTCAGCTTTTGAGCGCTGGCGGGCTCAAGGAGAA
CGTCGTCTTCTCGCCCTTCTCCATCCAAACTTGCATTGCCCTGGCCTTTG
CCGGATCGCAGGGTGAAACCGCCGACGAGATCGCCAAGGCACTGCACTTC
GTCTCCAACTTTCCGCCGGAGGTGGCCCAAACGTTCCAGTTTGTGCTGGA
GAAGTACCGCAACAGTAACCTGCTGCGCGTTGCCAACAAGCTGTACGTGC
AGGAGGGCAAGCAGCTGAAGCCCGCCTACCAGTCGGCCATCAAGGAGCAG
TATCATTCGGAGGCGGAGTCCATTAACTTTGCGCTCAACGATGCCGCCGC
CCAGGCCATCAATGCCTGGGTGAATGCCAAGACTCAGGGCAAGATTACGG
AGCTGGTCAGCGCGGACTCGTTCTCGGACAACACCAGGCTGGTCCTGCTC
AATGCCCTCCACTTCAAGGGCAGCTGGGCGCACAAGTTCAGCGAGGAGCG
CACCGAGGAGGATATCTTCTGGGTGGGCGAGGAGGAGCAAGTTAAAATCA
ACTACATGAACCAGAAGGCCAAGTTCAACTATGGCTTCTTCGAAGATCTG
GGCTGCACTGCCCTGGAGATGCCCTACCAGGACTCTGACCTCTCCATGTT
CGTGCTGCTGCCGCAGGAGCGGACAGGTATTTACGCCCTAGCCGAGAAGC
TCAAGACTGTGAACCTGGTGGATTTGGCCGACAAGTTGACCGTGGAAGAG
GTCCATGTCAAGTTCCCCAAGTTTAAAGTGGACTACTCCCTGGAATTGGC
CGAGAAACTGAAGCAGCTGGGCATCACGAAAATGTTTACGGACCAAGCTG
AGTTTAGCAATCTGCTGGAATCCCCGAGGGCGTCTTTGTGTCCAAGTGCT
GCACACGCACATCGAGTGAATGAGAGGCACGGAGCGCGCTGCACGCATGA
TCATGATGACCCGCATGATGACTCGCTGCAGTCAGCGACGTCCTCCTCTA
CGTCATCTGAATAGAAGAACATCCTCTGCTTGACTCGTAGCTTGCGCAGC
T
UFO04852.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn55B-RA | 1297 | CG10913-RA | 94..1189 | 9..1077 | 4805 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18126440..18127297 | 9..866 | 4260 | 99.8 | Plus |
| 2R | 25286936 | 2R | 18127862..18127945 | 864..946 | 370 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:49:47 has no hits.
UFO04852.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:04 Download gff for
UFO04852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn6-RA | 128..1074 | 1..946 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:23 Download gff for
UFO04852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn55B-RA | 86..1032 | 1..946 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:06 Download gff for
UFO04852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn55B-RA | 86..1032 | 1..946 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:06 Download gff for
UFO04852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18126432..18127297 | 1..866 | 99 | -> | Plus |
| 2R | 18127865..18127945 | 867..946 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:23 Download gff for
UFO04852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14013937..14014802 | 1..866 | 99 | -> | Plus |
| arm_2R | 14015370..14015450 | 867..946 | 98 | == | Plus |
