Clone UFO04853 Report

Search the DGRC for UFO04853

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:48
Well:53
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG4098-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO04853.5prime Sequence

452 bp (28 high quality bases) assembled on 2009-06-30

> UFO04853.5prime
CAATCCACATGACGAGTTTCGAGTTTGCACTGCTGCCGCTTCTGTTTTTG
CCACTGATCCTGGAAAACCCGCTAACCTCCGCCCAAATGATGTCATCCCT
GGTCCCCCGGGCATTTTCCGGCACCTAATGTGCCGCAACAACATGTATCC
GCGCAGCTCCTCCTCCGGTACCCCTTTTCCGACGAATTTTCTTCTGGTCG
GACCCGTTCCCGGACTACTGCCCGCCTGCGAACACGGCGCCACATATTGG
CGGGCAGGTGTGGGCTGATACGCCGTTGCCCCTTAACACATTCTGGCCTT
GTGGAATCCCCTGGATGGACAGGTAAACCGCGAATCCTTTCACGGTGCCT
ACAACGTGCAGAATGGACTGCCCCTAAATCCGATCGGGCGTACCGGACTA
ACCGGACGTGGTTCGCTATGCAGATGGGGTCCAAATCATGCCGCATATCC
AA

UFO04853.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-RA 1154 CG4098-RA 141..588 9..452 1795 94 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16608760..16609207 452..9 1695 94 Minus
Blast to na_te.dros performed on 2014-11-28 19:36:47 has no hits.

UFO04853.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:33 Download gff for UFO04853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 7..459 1..450 93   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:37 Download gff for UFO04853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 134..586 1..450 93   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:55 Download gff for UFO04853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 134..586 1..450 93   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:55 Download gff for UFO04853.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16608762..16609214 1..450 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:37 Download gff for UFO04853.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16601862..16602314 1..450 93   Minus