UFO04854.5prime Sequence
1158 bp (1017 high quality bases) assembled on 2009-06-30
> UFO04854.5prime
CAGTCGACATGTCGAGCAGTGCAACCATCGCAACGCCGCTGCCGCAGCCG
CAGCACCAGCAATTCGCCCTGCTGCCGAAGATCATTAACGGCGGAATTGC
GGGAATCATCGGAGTGACATGCGTCTTCCCACTGGACTTGGTCAAGACGA
GGCTGCAAAACCAGCAGATCGGACCCAATGGCGAACGCATGTACAACAGC
ATGTTCGATTGCTTCCGCAAGACGTACAAGGCCGAAGGATACTTTGGCAT
GTACCGCGGCTCTGGCGTGAACATCCTGCTAATCACACCTGAGAAGGCCA
TCAAGTTGACCGCCAACGATTACTTCCGCCACAAGCTGACCACCAAGGAT
GGCAAACTTCCGCTGACCAGTCAGATGGTTGCCGGCGGTCTGGCCGGTGC
ATTCCAAATTATCGTCACCACGCCCATGGAGCTTCTCAAGATCCAGATGC
AGGATGCGGGTCGCGTGGCGGCGGCGGCCAAATTGGCTGGAAAGACGGTG
GAGAAGGTGTCGGCCACCCAATTGGCTTCCCAGCTTATCAAGGACAAGGG
CATCTTTGGCCTGTACAAGGGTATCGGTGCCACAGGACTGCGAGATGTCA
CCTTCTCTATCATTTACTTCCCCCTTTTCGCTACTCTCAATGACCTGGGT
CCACGACGAAACGATGGATCTGGCGAGGCTGTGTTCTGGTGCTCCTTCCT
GGCGGGCTTGGCGGCCGGTTCCACCGCTGCCCTCGCAGTTAATCCCTTCG
ACGTGGTCAAGACGCGTCTGCAGGCGATTAAGAAGGCCGACGGTGAGAAG
GAGTTCAAGGGCATATCAGATTGTATCACTAAGACACTGAAGCACGAGGG
ACCCACCGCCTTCTTCAAGGGCGGCCTGTGCCGAATGATTGTGATTGCTC
CTCTGTTCGGATCGCTCAACGGTCTACTATCTGGGCGTGCCGAGGCTGCT
GGGCTATCAGAAAAGCAGCTTTCTAGACATTCGTTGCGCGCGGCCCAGGT
AGTGTCATAATCATAATCATATCATAATCATATCACACTAGGCCTAAGAG
ATCCTGGTCATGACTAGTGCTGATTCTAACAATAAAAAACGCCGCGCACG
AGCGTCTGAACAATTCCGAATGGATCTGAGGTCATACTGAATATCACACA
GGAGTCCA
UFO04854.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GC1-RB | 1658 | CG18347-RB | 182..1142 | 9..964 | 4675 | 99.4 | Plus |
| GC1-RA | 1450 | CG18347-RA | 182..1142 | 9..964 | 4675 | 99.4 | Plus |
| Tango9-RB | 3673 | CG10007-RB | 3510..3649 | 964..830 | 585 | 96.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11970288..11970775 | 203..690 | 2425 | 99.8 | Plus |
| 3R | 32079331 | 3R | 11970833..11970974 | 688..829 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 11970095..11970231 | 68..204 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 11971031..11971170 | 830..964 | 485 | 96.4 | Plus |
| 3R | 32079331 | 3R | 11969218..11969276 | 9..67 | 295 | 100 | Plus |
| 3R | 32079331 | 3R | 11972130..11972366 | 233..469 | 285 | 74.7 | Plus |
| 3R | 32079331 | 3R | 11971901..11972030 | 75..204 | 245 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:15 has no hits.
UFO04854.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:07 Download gff for
UFO04854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18347-RA | 152..1123 | 2..968 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:15:34 Download gff for
UFO04854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18347-RA | 173..1144 | 2..968 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:27 Download gff for
UFO04854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC1-RA | 173..1144 | 2..968 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:27 Download gff for
UFO04854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11969212..11969276 | 1..67 | 94 | -> | Plus |
| 3R | 11970095..11970229 | 68..202 | 100 | -> | Plus |
| 3R | 11970288..11970773 | 203..688 | 99 | -> | Plus |
| 3R | 11970834..11970974 | 689..829 | 100 | -> | Plus |
| 3R | 11971031..11971170 | 830..964 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:15:34 Download gff for
UFO04854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7794934..7794998 | 1..67 | 94 | -> | Plus |
| arm_3R | 7795817..7795951 | 68..202 | 100 | -> | Plus |
| arm_3R | 7796010..7796495 | 203..688 | 99 | -> | Plus |
| arm_3R | 7796556..7796696 | 689..829 | 100 | -> | Plus |
| arm_3R | 7796753..7796892 | 830..964 | 96 | == | Plus |
