UFO04857.5prime Sequence
1095 bp (1010 high quality bases) assembled on 2009-06-30
> UFO04857.5prime
CAGTCGACATGGGTATTAGCCGCGATAGTGCACACAAACGCCGGGCCACC
GGAGGCAAGCGCAAGTCGCTCCGCAAGAAGCGCAAGTTCGAGTTGGGACG
CCCCGCCGCCAACACCAAGCTTGGCTCCGGCCGCGTGCACAAGGTGCGCA
CCCGTGGTGGAAACACCAAGCTCCGTGCTCTGCGCCTGGAAACCGGAAAC
TTCGCCTGGGCCTCCGAGGGAGTGGCGCGCAAGACCCGTATCGCCGATGT
TGTGTACAACGCCTCCAACAACGAGCTGGTGCGAACCAAGACCTTGGTGA
AGAACAGCATCGTGGTCATCGATGCCACGCCCTTCCGCCAGTGGTACGAG
GCTCACTACGTGCTGCCCCTGGGACGCAAGCGTAACCCCAAGCACGCCCA
GAAGGAGGACGAGAACGACGTGCTGACCAAGAAGCGCAGCGAAAAGGTTA
TGAAGAAGTACCTGGAGCGCCAGAAGTACGGCAAGGTCGAGCAGGCCCTC
GAGGATCAGTTCACCTCCGGCCGCATCTTGGCTTGCATTTCTTCCCGCCC
CGGACAGTGCGGTCGCTCCGACGGCTACATTTTGGAAGGCAAGGAGTTGG
AATTCTACCTTAAGAAGATCAAGTCTAAGAAAGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAGCATTCTGCCGACATGGAAGCCATCACAACGGCATGATG
ACCTGATCGCAGCGCATCAGCACTGTCGCTTGCGTATATATTTGCCATGG
TGAAACGGGGGCGAGAGTGTCCATATGGCCACGTTCATCGAACTGGTGAC
TCACCCAGGATGGCCTGAACGAAACATTCCTATACCTTAGGAAAT
UFO04857.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS8-RG | 931 | CG7808-RG | 238..863 | 7..632 | 3115 | 99.8 | Plus |
| RpS8-RF | 726 | CG7808-RF | 33..658 | 7..632 | 3115 | 99.8 | Plus |
| RpS8-RE | 756 | CG7808-RE | 63..688 | 7..632 | 3115 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29862783..29863196 | 118..531 | 2055 | 99.8 | Plus |
| 3R | 32079331 | 3R | 29862198..29862305 | 12..119 | 540 | 100 | Plus |
| 3R | 32079331 | 3R | 29863414..29863515 | 531..632 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:50 has no hits.
UFO04857.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:08 Download gff for
UFO04857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS8-RC | 56..693 | 1..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:18 Download gff for
UFO04857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS8-RC | 26..663 | 1..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:39 Download gff for
UFO04857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS8-RE | 56..693 | 1..637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:39 Download gff for
UFO04857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29862192..29862305 | 4..119 | 96 | -> | Plus |
| 3R | 29862785..29863196 | 120..531 | 99 | -> | Plus |
| 3R | 29863415..29863526 | 532..644 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:18 Download gff for
UFO04857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25689137..25689248 | 532..644 | 94 | -> | Plus |
| arm_3R | 25687914..25688027 | 4..119 | 96 | -> | Plus |
| arm_3R | 25688507..25688918 | 120..531 | 99 | -> | Plus |
