UFO04864.5prime Sequence
1100 bp (999 high quality bases) assembled on 2009-06-30
> UFO04864.5prime
CAGTCGACATGCCTGGAGTCACAGTAAAGGAAATCGATCAGCACGTTCTG
ACCAAAAACATGGCTGCTTTTCTCAAAAAATCCGGAAAAATTTTTGTGCC
CGAACAGGCCGTCTATATGAAGACTGGCAAGTTCAAGGAGACTGCTCCTA
CCGACGACGACTGGTTCTACACTCGCTGCGCCTCTATTATGAGACACCTG
TACCTGCGCAGTCCCGCCGGCGTTGGGGCCTTCACCAAGGTCTATAGCGG
GCGCAAGCGCAACGGTGTTCGTCCGTCCAAGCACTGTCGCTCATCGGATG
GCTGTATTCGCAAGGCTCTTCAAGCCTTGGAAGCTGCAAACATGGTGGAG
AGGCACCCGGATGGTGGTCGTAAGCTGACTCCGCAAGGACAACGTAACTT
GGATCGCATAGCCAACAAGATTGTGGCCAAGCAGCGAGAGCGCAGTGCAC
CAGTTTCCATGATTATCACTACCGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAA
AACTGGTGAAACTCACCCAGGATTGGCTGAGACGAAAACATATTCTCAAT
AAACCCTTTAGGAAATAGCAGTTTCACGTACACGCCACATCTTGCGAATA
TATGTGTAGACTGCGAAATCGTCTGGTATCACTCTACGATGAACGTCAGT
GCTCATGAACGGTACAGTGACATCAATACAGCTCCCGCTCATGCTCGATC
UFO04864.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS19b-RC | 659 | CG5338-RC | 61..527 | 7..473 | 2320 | 99.8 | Plus |
| RpS19b-RB | 666 | CG5338-RB | 68..534 | 7..473 | 2320 | 99.8 | Plus |
| RpS19a-RE | 678 | CG4464-RE | 242..520 | 158..436 | 210 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23933089..23933397 | 315..7 | 1545 | 100 | Minus |
| 3R | 32079331 | 3R | 23932861..23933021 | 473..313 | 790 | 99.4 | Minus |
| X | 23542271 | X | 16638484..16638594 | 158..268 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:07:12 has no hits.
UFO04864.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:11 Download gff for
UFO04864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS19b-RB | 63..534 | 1..473 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:10 Download gff for
UFO04864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS19b-RB | 63..534 | 1..473 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:20 Download gff for
UFO04864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS19b-RB | 63..534 | 1..473 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:20 Download gff for
UFO04864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23933090..23933401 | 1..314 | 99 | | Minus |
| 3R | 23932861..23933019 | 315..473 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:10 Download gff for
UFO04864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19758583..19758741 | 315..473 | 99 | <- | Minus |
| arm_3R | 19758812..19759123 | 1..314 | 99 | | Minus |
