UFO04866.5prime Sequence
1130 bp (1021 high quality bases) assembled on 2009-06-30
> UFO04866.5prime
CAGTCGACATGGAAATTTGGCGCTCGCTCACAGTGGGCACCATCGTGCTA
TTGGCCATCGTCTGCTTCTACGGCACCGTGGAGTCCTGCAACGAGGTCGT
CTGCGCCTCGATCGTCTCCAAGTGCATGCTCACCCAGAGCTGCAAGTGCG
AGCTGAAGAACTGCTCCTGCTGCAAGGAGTGCCTCAAATGCCTGGGCAAG
AACTACGAGGAGTGCTGCAGCTGTGTGGAACTCTGTCCGAAGCCCAACGA
CACCCGCAACTCGCTGTCCAAGAAGTCCCACGTGGAGGATTTCGATGGAG
TGCCGGAGCTCTTCAACGCCGTGGCCACTCCGGATGAGGGCGACAGCTTC
GGATACAACTGGAACGTGTTCACGTTTCAAGTGGATTTCGACAAGTACTT
GAAGGGACCCAAGCTGGAGAAGGACGGTCATTACTTCTTGAGAACCAATG
ATAAGAACCTGGACGAAGCGATTCAGGAGCGTGACAACATTGTGACCGTA
AACTGCACGGTTATATATCTGGATCAGTGCGTGTCGTGGAACAAGTGCCG
CACCAGCTGCCAGACGACAGGCGCCAGCAGTACGAGATGGTTCCACGACG
GCTGCTGCGAATGTGTGGGATCCACGTGCATCAACTACGGCGTAAACGAG
AGCCGCTGTAGAAAGTGCCCGGAGTCAAAGGGCGAACTGGGCGACGAGCT
GGACGATCCCATGGAGGAGGAGATGCAGGACTTCGGGGAGAGCATGGGTC
CGTTCGATGGACCCGTGAACAACAACTACGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTCTGAACAAATCCA
GATGGAGTCTGAGTCATACTGATCTATCAACAGGAGTCAGCGAGCTCGAT
ATCAATACCGCCCCGCCTGCCACTCCATCGCAGTACTGTTTGTATCATAG
CATTCTGGCGACTTGAGCCATCACAAACGCATGATGACCTGATTCGCACG
GCATCAGCACTGGCCCCTGGCTAATGCATG
UFO04866.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cv-RC | 1742 | CG12410-RC | 767..1538 | 8..779 | 3860 | 100 | Plus |
| cv-RB | 1308 | CG12410-RB | 333..1104 | 8..779 | 3860 | 100 | Plus |
| cv-RA | 1893 | CG12410-RA | 607..1378 | 8..779 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5690768..5690988 | 8..228 | 1105 | 100 | Plus |
| X | 23542271 | X | 5691891..5692105 | 228..442 | 1075 | 100 | Plus |
| X | 23542271 | X | 5692375..5692569 | 585..779 | 975 | 100 | Plus |
| X | 23542271 | X | 5692165..5692309 | 442..586 | 725 | 100 | Plus |
| X | 23542271 | X | 11988727..11988837 | 197..87 | 210 | 79.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:19 has no hits.
UFO04866.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:20 Download gff for
UFO04866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-RA | 605..1389 | 1..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:52 Download gff for
UFO04866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-RA | 599..1383 | 1..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:57 Download gff for
UFO04866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cv-RA | 599..1383 | 1..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:57 Download gff for
UFO04866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5691892..5692104 | 229..441 | 100 | -> | Plus |
| X | 5692165..5692309 | 442..586 | 100 | -> | Plus |
| X | 5692377..5692577 | 587..786 | 97 | -> | Plus |
| X | 5690760..5690988 | 1..228 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:52 Download gff for
UFO04866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5584793..5585021 | 1..228 | 98 | -> | Plus |
| arm_X | 5585925..5586137 | 229..441 | 100 | -> | Plus |
| arm_X | 5586198..5586342 | 442..586 | 100 | -> | Plus |
| arm_X | 5586410..5586610 | 587..786 | 97 | -> | Plus |
