UFO04871.5prime Sequence
1061 bp (971 high quality bases) assembled on 2009-06-30
> UFO04871.5prime
CAGTCGACATGGTAGCTGGTGGTGCCTCGGAAACGGGCGGCGTGAAGCCG
ATGGTAATTGCGGGCCGCATGGTGCGGGAGCGGGAGCGCCTGATCGGCAT
GTCGCCGGAGGAGCGCGCCTGGCGCAAACAGTGGCTGAAGGACCAGGAGC
TGCACCATGGACCCCGCAAGGTGCCCGCCCTGGAGCTGGAGCTGAACAAC
CCCATCAAGCGCTTCTACCGCGCTCCCCTCGACAAGGTCTGCAATGTTTT
GGAACCCGTCCTGGGCTTTCAGCGCGCGTACACCGTGCGCTTCTGGACCG
GAAAGGCTCTGCTCGCCCTAACCGGAATCTACGCCGGCGCCTACTACTTC
AAGTACAATCAGAATGACTGGACCCGGAAGGGCGGCTGGCGTGTGATCCA
CTCGCGCAAGCAGTGCGTGCCCGGAGATGAGGGCTATCCCAAGGTCTCCG
ATCGATCGGCGCCTTCCGATTACGCGGCTCGCGGATTCAACGAGTCGCCG
CTGAAAGCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGGCAT
CAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAACGGGGGC
GAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGTGAAACTCACC
CATGGATTGGCTGAAACGAAAAACATATTCTCATATCCCTTAGGAAATAG
CCAGTTTCACCGTACACGCCAATCTGCAATATTGGTAGACTGCGAATCAG
ATCTTGCTTAT
UFO04871.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Di-RC | 992 | CG13240-RC | 103..603 | 9..509 | 2460 | 99.4 | Plus |
| l(2)35Di-RA | 710 | CG13240-RA | 103..603 | 9..509 | 2460 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15750721..15750976 | 264..9 | 1265 | 99.6 | Minus |
| 2L | 23513712 | 2L | 15749708..15749851 | 509..366 | 705 | 99.3 | Minus |
| 2L | 23513712 | 2L | 15750549..15750652 | 366..263 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:07 has no hits.
UFO04871.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:33:08 Download gff for
UFO04871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Di-RA | 70..584 | 1..514 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:39 Download gff for
UFO04871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Di-RA | 94..608 | 1..514 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:17 Download gff for
UFO04871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Di-RA | 94..608 | 1..514 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:17 Download gff for
UFO04871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15749708..15749851 | 366..509 | 99 | <- | Minus |
| 2L | 15750550..15750651 | 264..365 | 99 | <- | Minus |
| 2L | 15750722..15750985 | 1..263 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:39 Download gff for
UFO04871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15749708..15749851 | 366..509 | 99 | <- | Minus |
| arm_2L | 15750550..15750651 | 264..365 | 99 | <- | Minus |
| arm_2L | 15750722..15750985 | 1..263 | 98 | | Minus |
