UFO04872.5prime Sequence
1050 bp (942 high quality bases) assembled on 2009-06-30
> UFO04872.5prime
CAGTCGACATGAAAATGCATATGAAACATCTAGATTTATATTCCCAGGCT
ATAAAGACGCTCCGCTGGACACAGCCAATGCGGGCTCTGTCCACGGTAAA
CACCAGTTCCGGCGTACAAGGCAATCTTTCACCTGCGGCACCTGCTCCGG
AACCGGATAAACTCTACAGCAAGCTGGAGATTGAGCTGCGGGGTATTGAT
CCGGCAGTTCTGAAGAGCTACACCTGGTTTGCTACTACTGCTGCCGAGCA
TTTGGGCATTGAAAAGGGAAAATGTTGGTCACCTCGCAAGGCGCACCACG
AGCGGATGACGCTCCTGAAGTCGGTGCATATCTACAAGAAACATCGCGTA
CAGTACGAGGTGCGAACCCACTTCCGCTATATGAACTTCCACAAGTTGAC
GGGCTCCACGCTAGATACATTTCTAGAGTATATTGAACGTAATCTGCCCG
AGGGCGTAGCGCTGCAGGCTTCCAGGACTGAGCTGCAGGAGATCCCAGAG
CACTTGCGCCAGCCGCCGGAGCAAGTTGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCC
CATGTGAAACGGGGCGAGAGTGTCATATGCACGTTAAATCAAACTGTGAA
CTCACCAGGATGGCTGAGACGAAAAACATATCTCATAACCGTAGAAATAG
CAGCTTCACGTAACCGCCAATCTGCAATATTGGTGAACTGCGATCGTCTG
UFO04872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS10-RB | 746 | CG4247-RB | 61..579 | 9..527 | 2595 | 100 | Plus |
| mRpS10-RA | 723 | CG4247-RA | 74..556 | 45..527 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15229762..15230027 | 9..274 | 1330 | 100 | Plus |
| 3R | 32079331 | 3R | 15230096..15230349 | 274..527 | 1270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:30:22 has no hits.
UFO04872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:41 Download gff for
UFO04872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RB | 5..532 | 1..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:16 Download gff for
UFO04872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RB | 56..583 | 1..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:07 Download gff for
UFO04872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RB | 56..583 | 1..533 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:07 Download gff for
UFO04872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15229757..15230027 | 1..274 | 98 | -> | Plus |
| 3R | 15230097..15230353 | 275..533 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:16 Download gff for
UFO04872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11055479..11055749 | 1..274 | 98 | -> | Plus |
| arm_3R | 11055819..11056075 | 275..533 | 98 | == | Plus |
