UFO04873.5prime Sequence
1112 bp (1020 high quality bases) assembled on 2009-06-30
> UFO04873.5prime
CAGTCGACATGCCAGCACCAGAGGACCTAAACTCCTCCGACCAAGAGGAA
TATTTCTGCACCGAAAAGGACGCCGCTGCCGATGGAAGTCATCTGTTGCA
TGCCCCTGGAACGGTGGATGGAGCAACTGCATCCACCTCGGCTCCGGGAC
TGGGCGGCAACCACATGACCAGCAGCTGGTGGTGGCGCACTCGCAGCTTG
AATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCATCATGAA
AAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAACGTCTCA
CCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTCAGCGAT
GCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCTGCAGGA
GAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATGTCCAGC
TCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTGACTTTC
AAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATAGTTTGCCT
GGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGCAATCTG
TGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTCACACCC
TTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTGGAGGGTCA
CGCTGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCATCGCAGAG
CGATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAGATGGTGAGG
CGCGACCTGCAGCCAACAGCATACTGGTGCTCAACGAAGTGGTCATTGAT
CGTGGTCCATCGCCGTATCTGAGCAATATTGATCTGTTTCTGGACGGAAG
TATATCACGTCGTGCAGGCGACGGTCTGATCGTATCGACGCCCACGGGAA
GCACGGCATATGCGGCGGCGGCGGTGCGTCATGATCATCCCTCGTGCCGG
CGATTATGTGACTCCATCTGCCGCATCGCTAGCTCCGACCCATGTGTGCA
GCAGGAGTGGACCTGAAAATATCAGTATCCCGGAGAGCCGCAAACAGTCT
GTTAGCTTGATG
UFO04873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RA | 1874 | CG33156-RA | 147..1249 | 9..1093 | 5020 | 98.1 | Plus |
| CG33156-RF | 1795 | CG33156-RF | 243..1170 | 184..1093 | 4145 | 97.7 | Plus |
| CG33156-RB | 1824 | CG33156-RB | 272..1199 | 184..1093 | 4145 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13549063..13549536 | 972..503 | 2170 | 99.2 | Minus |
| 2R | 25286936 | 2R | 13549599..13549917 | 502..184 | 1595 | 100 | Minus |
| 2R | 25286936 | 2R | 13552107..13552283 | 185..9 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 13538625..13538855 | 733..503 | 585 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13539104..13539350 | 433..184 | 585 | 83.2 | Minus |
| 2R | 25286936 | 2R | 13538313..13538468 | 966..814 | 270 | 82.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:28:50 has no hits.
UFO04873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:23 Download gff for
UFO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RA | 116..1234 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:13 Download gff for
UFO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RA | 139..1257 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:14 Download gff for
UFO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RA | 139..1257 | 1..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:14 Download gff for
UFO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13548954..13549536 | 503..1068 | 96 | <- | Minus |
| 2R | 13549599..13549916 | 185..502 | 100 | <- | Minus |
| 2R | 13552108..13552289 | 1..184 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:13 Download gff for
UFO04873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9436459..9437041 | 503..1068 | 96 | <- | Minus |
| arm_2R | 9437104..9437421 | 185..502 | 100 | <- | Minus |
| arm_2R | 9439613..9439794 | 1..184 | 98 | | Minus |
