UFO04875.5prime Sequence
1111 bp (1021 high quality bases) assembled on 2009-06-30
> UFO04875.5prime
CAGTCGACATGTGTATCTTTAAAAAAAGAGACGCTTATCATCAGGCGGTT
ATTATGAAAGGCAATCATTATAAAATGTCTCGTAACAAAGACAAATACGA
CAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAGGAGGACATAGCTG
CGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTACTGGCTGCGTCCGC
AATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAACCGCCCTCTACCT
GAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTTGGCATGCTGACCA
GCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAGAAGTCTTCCCGCA
GAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGCTGAACAACAACTT
TCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTCCACCTCGTCATAC
TCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCATGAACATCTACAAC
GAACCGAACGGCACGCAGAAACTGCTCACCTACATGCTGGACAACTTGTC
ATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTGCCACTGGCCAAGC
CCAACAAAACGCGACCAGCCTGCATTTTTACGGTCATGTGCTATAATGTG
CTCTGCGACAAGTACGCGACGCGACAAATGTACGGATACTGTCCGTCGTG
GGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATCGACGAGATACGGC
ACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGAAACGGAGCAATTC
TATCACTTCTTCCTGCCGGAACTCAAGAACGATGGGTACGAGGGAATCTT
CTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTGGAGAGGAAGTACG
TCGATGGCTGTGCGATATTCTTCAGGCGTCCAAGTTTACGCTGATCAAGG
AATCATTGATCGAGTCAATCAGCTGGCAATGGCCAATGCCGAGGCTCGAC
AACATGCTGACGCGTAATGCTAAGATACATCGTCTGCCGCACTGCTCAAG
GTGAAGGAGAACGCATGGAGCGATGTTCGAGGTGACGCATCCTCGAGTGC
TGCTGTCTGCA
UFO04875.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RC | 2586 | CG31137-RC | 38..1131 | 9..1089 | 5140 | 98.7 | Plus |
| twin-RE | 3548 | CG31137-RE | 320..1395 | 27..1089 | 5050 | 98.7 | Plus |
| twin-RF | 2690 | CG31137-RF | 162..1235 | 29..1089 | 5040 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24199283..24199587 | 926..622 | 1525 | 100 | Minus |
| 3R | 32079331 | 3R | 24219964..24220157 | 377..184 | 955 | 99.5 | Minus |
| 3R | 32079331 | 3R | 24219600..24219776 | 552..376 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 24220214..24220345 | 190..59 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 24199882..24199951 | 622..553 | 350 | 100 | Minus |
| 3R | 32079331 | 3R | 24199046..24199213 | 1089..934 | 275 | 84.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:52:27 has no hits.
UFO04875.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:10 Download gff for
UFO04875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RC | 38..1138 | 9..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:04 Download gff for
UFO04875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RC | 38..1138 | 9..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:27 Download gff for
UFO04875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RC | 38..1138 | 9..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:27 Download gff for
UFO04875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24220828..24220847 | 9..28 | 100 | | Minus |
| 3R | 24199275..24199587 | 622..933 | 99 | <- | Minus |
| 3R | 24199883..24199951 | 553..621 | 100 | <- | Minus |
| 3R | 24219600..24219775 | 377..552 | 100 | <- | Minus |
| 3R | 24219965..24220151 | 190..376 | 100 | <- | Minus |
| 3R | 24220215..24220343 | 61..189 | 100 | <- | Minus |
| 3R | 24220532..24220563 | 29..60 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:04 Download gff for
UFO04875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20046254..20046285 | 29..60 | 100 | <- | Minus |
| arm_3R | 20046550..20046569 | 9..28 | 100 | | Minus |
| arm_3R | 20024997..20025309 | 622..933 | 99 | <- | Minus |
| arm_3R | 20025605..20025673 | 553..621 | 100 | <- | Minus |
| arm_3R | 20045687..20045873 | 190..376 | 100 | <- | Minus |
| arm_3R | 20045322..20045497 | 377..552 | 100 | <- | Minus |
| arm_3R | 20045937..20046065 | 61..189 | 100 | <- | Minus |
