UFO04880.5prime Sequence
1123 bp (1027 high quality bases) assembled on 2009-06-30
> UFO04880.5prime
CAGTCGACATGGAGAAGCGACAGAGGGAGCTGGAGGCGCTGGTGTCCACC
CAAAAGGAGCAACTGGGGCGCTATGAAAAGCGTCTAAAAGACGTGGTCAC
TGCCTACAAGGGTCTGCTTAAGGAGAAGGAGGCATTGGAGACGAGTCTGG
CGGCGCATGCGGAGGCCACGGCGGTGGGCGAGTCCGGATCGCCGGCCAGG
GAGTTGGAGTCCAAAAAAACCAGCACCGACTCTGCGGATGGAGCAACCGA
GGGCGCTGCACCGGGTCCGCCTGCTCCCCCGGCCGAGGGTCAACTGCAGA
CCCAAATTATCACCCTGATGAACTCGCTGGCCACTCTTTCCGCTGAGAAA
TCCCGCATGGAGGCCTCCTTTCAGGCGGATAAAAAGCAACTGCGCAGCCA
AATCGCCCAAAAGGAGCAGACCATTCAGGAGCTTAATACCCGGGCCAAGG
AGCAGGCTGCTCGGGCCAAAAGCGACGTGGACGAGATCAAGGCCAAGTGG
ATCGTGGAGCGACAGGAGCGCGAGAAAGAGACCAACAACCAAATGCTCAT
GATCCGCGAACTGCAGAAACTCTATGCGGACGAGCGGCATCTAAAGGACA
ACATTGAGATGCAGTTAAACAACTTCAAGACCCAGTTCGCCAGCAACGAG
GCAGAGAATAGCCGGCTACGGGAATTGCAATCCCAGCTAAAGGAGGCTCG
CTCCCAGCTGAAACAGTTCCAGGCCAAGACCGAGCACTCTGCAGCAGCGT
CAGCGAGTGCGGACAGCGCCGCTCTCCTTCAGCAAGTGCGCCTTGAGATG
CAGCAACTGAAAGGAGCAGCATGCAGTGGCCATTCGTCAGGACAGCGTCG
CGTGCTGCGTGCCGAGGAACAGAGTCGCAGCAGGCGGCGCTGCACGAGGA
TCGCGTGCCAGTCTAGAGGCACGCCTGGCGGAGCTCAGCACCACTGTCGG
CAGCTACGACCGCCTGCGTCAGCAAGAATCATGACAGCATCCATGATTTG
AAGCAGCAGCTGCAGGATCTAGAAGCAGCACATTTGCGTCAACATCCAAT
TCAAGGCGCCTAAACGAGAATGTGACGTAGCACGCTGGGTTGACGAATGG
GTGGCTTGAAAAACTGCCATAAC
UFO04880.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC88-RA | 2322 | CG10703-RA | 148..1265 | 5..1117 | 5120 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11229329..11230316 | 1074..89 | 4485 | 98.3 | Minus |
| 3R | 32079331 | 3R | 11230368..11230453 | 90..5 | 415 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:52:16 has no hits.
UFO04880.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:24 Download gff for
UFO04880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 111..1195 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:58 Download gff for
UFO04880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 143..1227 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:22 Download gff for
UFO04880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GCC88-RA | 143..1227 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:22 Download gff for
UFO04880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11229309..11230314 | 91..1094 | 98 | <- | Minus |
| 3R | 11230368..11230456 | 1..90 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:58 Download gff for
UFO04880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7055031..7056036 | 91..1094 | 98 | <- | Minus |
| arm_3R | 7056090..7056178 | 1..90 | 96 | | Minus |
