UFO04881.5prime Sequence
1095 bp (991 high quality bases) assembled on 2009-06-30
> UFO04881.5prime
CAGTCGACATGCACATTATCTGCAAGTCGCAGTGCGGAAATCGCGCTGCT
TTGAAGCGACCCAAAACCGGCGATGCCCTGTGCAAGGAGTGCTTCTTCGC
AGCCTTCGAGGCAGAGATCCATCACACAATCTCCTCCAGCAACTTGTTCC
GACGTGGCGAGAAGGTGGCCGTAGCGGCCAGTGGAGGCAAGGACTCCACG
GTCCTAGCGCACGTATTAAAACTGCTAAACGAACGCCATAACTACGGTCT
GGAACTGGTGCTCCTTTCCATAGACGAAGGCATCACTGGATATCGGGATG
ACAGTTTGGAGACAGTGAAACAGAACCGTGACGACTACCAGATGCCACTA
AAGATCCTGTCCTACGAGGAGCTCTACGGCTGGACCATGGACCGCATTGT
TGCCCAGATCGGCCGTTCTAACAACTGCACATTTTGCGGCGTCTTCCGCC
GACAGGCCTTGGATAGAGGGGCCAAGCTGTTGGGCGTTGATAGCATAGCC
ACAGGCCACAATGCAGATGACATTGCGGAGACTGTCTTGATGAACGTGCT
CCGTGGGGACACGGCGCGCCTGCGACGCTGCACGAGCATCCGCACCGGCG
GGGGCGAGGATACCATTCCCCGAGTGAAGCCCCTCAAGTACAGCTACGAG
AAAGAAATCGTGATGTACGCCCACTACAAAAAGCTGGTCTACTTCTCAAC
GGAGTGCGTATTCGCCCCCAATGCGTATCGCGGCCACGCTCGAGCGTTTC
TCAAGGATTTGGAGAAAGTGCGACCATCGGTTATAATGGACATCATCTAC
TCTGGCGAACAGCTTCGCTTCAAGGACACGGTAAAGAAGCCCGAGCGTGC
ACATGCACCCGATGTGGCTTCGTTTCCTCACAGCAGCCGTGCAAGCGTGC
GTCCTTCTCGAGGGTCTAAATAGAGGATTGCCGAGCTGGGCATAGCAGAG
TCGAGGCGAGCGATGATGCAGCAGACAGACTAGCATGCGGGAGCGAGCCA
ACTAGTAAAACGATTTTGCAGCTTTCTAGAACATTCGTGGCGCGCGGCCA
GTATGTCTATCTAATCCTATCTATCCTATCACTAGCTAGTATCTG
UFO04881.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8078-RA | 1487 | CG8078-RA | 76..1104 | 9..1017 | 4680 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9097403..9098136 | 945..215 | 3520 | 99.6 | Minus |
| 2R | 25286936 | 2R | 9098189..9098349 | 214..54 | 805 | 100 | Minus |
| 2R | 25286936 | 2R | 9098403..9098450 | 56..9 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:25 has no hits.
UFO04881.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:11 Download gff for
UFO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8078-RA | 10..945 | 1..934 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:23 Download gff for
UFO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8078-RA | 68..1003 | 1..934 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:43 Download gff for
UFO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8078-RA | 68..1003 | 1..934 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:43 Download gff for
UFO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9097415..9098136 | 215..934 | 99 | <- | Minus |
| 2R | 9098189..9098346 | 57..214 | 100 | <- | Minus |
| 2R | 9098403..9098458 | 1..56 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:23 Download gff for
UFO04881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4984920..4985641 | 215..934 | 99 | <- | Minus |
| arm_2R | 4985694..4985851 | 57..214 | 100 | <- | Minus |
| arm_2R | 4985908..4985963 | 1..56 | 94 | | Minus |
