UFO04882.5prime Sequence
1087 bp (989 high quality bases) assembled on 2009-06-30
> UFO04882.5prime
CAGTCGACATGGTGCTCGTGCTGAATGGTGTGCTGCAGGATGACTGCCCC
ATGGACACCAACAGCCTGTTCCTGCAGCATCCCGTCTACAGAGACTACGC
CCAGCAGCTGCACTCCATTCAGGCCAAGTCGGTGGGTCCGGTGGGTCTGC
TCTACGTGGGTCAGCGGGAGATGGCCGCCTCTGCCCCGCACGACAAGCAC
GTCAACATCATCGGTGCCGACGATGCCACCACCTGTATTATCGTTGTGGT
CCGGCACTCCGGATCTGGTGCTGTGGCCCTGGCGCACTTCGATGGCAGCG
GCGTGGACGAGGCTGTGTGCACCATGGTGTCGCGGGTTCAGGAGCTGGCC
GTCGGCTATCCGGAGGGTCGCATCGAGTTGCAGTTGATTGGTGGCTATCG
CGATGCCAAGGGATACGGCGAGGACGTATTCTTCAGCATTATGCAATCAT
TCCACAATCACCTACTTGAAATCGATCTGACGCAGGCTTGCGTGGGCGAG
CTAAATACCATGATGCGCGGCGAGATCAACTGCCCCATCATCTATGGAGT
GGGCGTGAACATCAAGACTGGTGAGATCTTTCCGGCCTCCTTTCCAGACC
GAGGACCCGACCGGGAGCTACGCGATGCTCGCATCTTCATGGGCGCGCAG
TCGGTTCTGGATATATACGACTCCTCGCTGGGCATGCTACGCATTGGACC
CTTTAACTACGATCCTTTGCGCGGCGCTGATCTGTGGCTATCACAAACGG
ATGAGTTTCTGTTGCAGCACCTGTCCTCCAGTCCAGACGTGGAGCCGCCT
CACTTTGCGCCTCAGACGCGTGCCACCATTAGTTTATACAGGAGAATCAG
TTCCCCGCCGTCACCGTTTTCAGGACAATCGGGCCGCGCTACTTCCGGCG
GGATGACGCCACGGGCTTCTGGGTGCTGATACAGATGCAAGCTTTCTAGA
CCATTCGTTGGCGCGCGGGCCCAGGTAGTGTTCATATCATATCATATCAT
ATCATATCACACTAGCCTAGGGAGATTCTGTCATGACTATGCTGATTCTC
ACAATAAAACGCCGCGCAACGAGCGTTGACATCCATG
UFO04882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP2637-RB | 1450 | CG5473-RB | 359..1284 | 9..933 | 4560 | 99.7 | Plus |
| SP2637-RA | 1340 | CG5473-RA | 249..1174 | 9..933 | 4560 | 99.7 | Plus |
| SP2637-RD | 1876 | CG5473-RD | 359..1279 | 9..928 | 4535 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18642404..18642657 | 262..9 | 1270 | 100 | Minus |
| 2R | 25286936 | 2R | 18641857..18642067 | 655..445 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 18642132..18642315 | 444..261 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 18641635..18641797 | 815..653 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 18641459..18641575 | 928..813 | 445 | 94 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:09 has no hits.
UFO04882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:21 Download gff for
UFO04882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RB | 347..1284 | 1..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:31 Download gff for
UFO04882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RA | 241..1178 | 1..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:01 Download gff for
UFO04882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RA | 241..1178 | 1..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:01 Download gff for
UFO04882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18641452..18641572 | 816..936 | 95 | <- | Minus |
| 2R | 18641635..18641796 | 654..815 | 100 | <- | Minus |
| 2R | 18641859..18642067 | 445..653 | 100 | <- | Minus |
| 2R | 18642132..18642314 | 262..444 | 100 | <- | Minus |
| 2R | 18642405..18642661 | 1..261 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:31 Download gff for
UFO04882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14528957..14529077 | 816..936 | 95 | <- | Minus |
| arm_2R | 14529140..14529301 | 654..815 | 100 | <- | Minus |
| arm_2R | 14529364..14529572 | 445..653 | 100 | <- | Minus |
| arm_2R | 14529637..14529819 | 262..444 | 100 | <- | Minus |
| arm_2R | 14529910..14530166 | 1..261 | 98 | | Minus |
