UFO04884.5prime Sequence
1096 bp (973 high quality bases) assembled on 2009-06-30
> UFO04884.5prime
CAGTCGACATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAGAGGTTATG
AAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCTCTACTATGGCGT
TGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCTTTGCGGAGTACG
CGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCTTTGCATCGCCTA
AGTTGCGTATCTGCTGCACAAGTACATGCCACGCCTTGCTCTTTAATTAT
GGCATTGATATACCTCGATCGCTTAAACGTCATCGACTCGGGCTATAGCT
GCAGAATCACACCACAGCAGCTGTTTGTTGTGTCACTAATGATTTCCACA
AAATTCTACGCGGGCCACGACGAACGGTTCTATCTGGAAGACTGGGCCAG
TGACGCTTGTATGACGGAAGATAGGCTCAAGGCAGTCGAGCTCGAATTTC
TTTCCGCTATGGGTTGGAATATATACATATCCAATGAGCTATTCTTTGAT
AAGTTAAGAAACGTTGAACGTTCTTTGGCTGAACAGCAGGGACTGCGTAG
AGGTTGGCTCACTTACAGTGAGCTCGTGCAGTTGCTGCCTAGCCTTGAAT
GGACGAAATTCCTCGTTAACAGCCTGTCTGTACTATCTCTAAGCTATGCG
GCAAGTATTATAACATTAGCCGGAGCTTTTTTTATTGCGAGCCAAGTTCC
CGGTACGTTATGGCATCGGGATGTGGAAACTGCCTCAGATTTCACCATGA
CAATTAGCAGTCAGGTATCCGTTTCAAATGCATTAGAGTCCACACCTTTT
ATTAATGTCCAAGTATCCTCACTTTTACGTAAAACGAGTAACGTGAATGT
TGAATTGATGAATCTTGAGAAGACAGCTGCGCCAGGGCAAGACTGATAAA
TTGATATAGCATCGCGCATCATCAGTACTACGCTTTCATCATAGCACTGT
CCACACTGATTATGTATGCCAGATGACAGATGCTAATATAATCGCCACAG
CGACTACACACGGATCTTTCAATACAGTAGATTCGTACACTGAAAGCCAA
AGCTGATGATCGTATGCAGCAATCGAGCATGCAGCAAGCTTCTAGA
UFO04884.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40191-RC | 1518 | CG40191-RC | 246..1204 | 9..955 | 4495 | 98.7 | Plus |
| CG40191-RD | 1386 | CG40191-RD | 66..1024 | 9..955 | 4495 | 98.7 | Plus |
| CG40191-RA | 2923 | CG40191-RA | 66..1024 | 9..955 | 4495 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1265342..1265778 | 461..896 | 2135 | 99.8 | Plus |
| 2R | 25286936 | 2R | 1264546..1264841 | 43..338 | 1480 | 100 | Plus |
| 2R | 25286936 | 2R | 1265171..1265294 | 339..462 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 1264458..1264495 | 9..46 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:16:47 has no hits.
UFO04884.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:09 Download gff for
UFO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40191-RD | 83..1052 | 6..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:36 Download gff for
UFO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40191-RA | 63..1032 | 6..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:30 Download gff for
UFO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40191-RA | 63..1032 | 6..961 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:30 Download gff for
UFO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1264455..1264493 | 6..44 | 97 | -> | Plus |
| 2R | 1264548..1264841 | 45..338 | 100 | -> | Plus |
| 2R | 1265171..1265293 | 339..461 | 100 | -> | Plus |
| 2R | 1265343..1265772 | 462..890 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:36 Download gff for
UFO04884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 391088..391126 | 6..44 | 97 | -> | Plus |
| 2RHet | 391181..391474 | 45..338 | 100 | -> | Plus |
| 2RHet | 391804..391926 | 339..461 | 100 | -> | Plus |
| 2RHet | 391976..392405 | 462..890 | 99 | -> | Plus |
