UFO04885.5prime Sequence
1119 bp (1019 high quality bases) assembled on 2009-06-30
> UFO04885.5prime
CAGTCGACATGTTTCTGTTCATCAGCCGTCCCACGCGGACGCTGGGCAAC
CGAATGCAGGCGGTTCGGGAGCGCTTGGGTCCGGACTTAGCTGATCAACT
GGACGCTCTGCATCGTAATGTGATGCGGACTGGTCTGGTGTCCACACAGG
AGCTGGAGGAGGCATTCCGCAAAACGCGCGACATGGACCACAACCCGAAC
CGGTTGAATCTGCTCTGGCTGCTGGGCATCGTGTTCTTCATCATGGTGGC
CACCCCGGTCTTTTATGAGACCATCTCGTTCCTGCTCGGAGTGCGTTGCT
TTCTGCCCAACAACTACTTGGTATGGGAGGCCACCAGGCCCATTAGTGAC
TGCGAGTTTTGTAAAGGGGTGAGGGCTCCCCTGATCTTGGCCAATCTCAC
CATGGAGGAGTTTGCACCGCACGCGTACTCCTCAATGCCCATCATTGTGA
AGAGGGCGGTGGCTCACTGGCCAGCACAAAAGAACCTCAGCTTTGCCTTC
ATAAAAGAATTGTACGAAAGTGTCCCGGGAGCAATGGACTCAGATTGCCA
GTTTCTGCACTTCAACTCTGATCTCAAGTCGCTGAAGCATGTGTTTTCCA
TGTCCGCGGAGCGTTCAAATCTTACTCAAGGAGTGCCCTGGTTCGTGGGC
TGGAGTGTCTGCCAGCCGGCCGTCCTGGCGGAGCTCAGAAAGCTGTATCC
CCGCCCGCATTTCCTGCCCTTCGATGCTGAAATGCCTCACACGGACTTCA
TATTAATGGGCTACGAGCAAGGGGCTGTGATGCATCTTGATTACATTCCC
CGCCTGTTGTGGCAAGCTCAGTTAAGTGGCAACAAGACCTGGTTTCTGGC
ACCTGCTCCTGAATGTGACCACCAGTGTCAGCCCTTCTCCTTCTATGTGG
AGCCCGGAGATGCTGTGTGGTGACACACGCATCTGGTACCATGCCAATTC
ATTCCCAAGGGTCAGTTTTCCCCTCACCGTCAGTCGAGTATGGAGCAAGC
TTTCTAGAACATTCGTTTGGCGCGCCGGCCAGGGTAAGTGGTCATAATTC
ATAATTCTAAATCTATCATAATCCCAACTAGCTTAGAGATCTTGTCAATG
AACATGGGCTTGAATTCCA
UFO04885.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2211-RB | 1226 | CG2211-RB | 56..1045 | 9..994 | 4790 | 99.3 | Plus |
| CG2211-RA | 1941 | CG2211-RA | 771..1760 | 9..994 | 4790 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1333689..1334457 | 785..17 | 3845 | 100 | Minus |
| 3L | 28110227 | 3L | 1333445..1333632 | 970..786 | 795 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:13 has no hits.
UFO04885.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:12 Download gff for
UFO04885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2211-RA | 706..1704 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:43 Download gff for
UFO04885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2211-RA | 762..1760 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:19 Download gff for
UFO04885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2211-RA | 762..1760 | 1..994 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:19 Download gff for
UFO04885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1333420..1333632 | 786..994 | 96 | <- | Minus |
| 3L | 1333689..1334457 | 17..785 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:43 Download gff for
UFO04885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1333420..1333632 | 786..994 | 96 | <- | Minus |
| arm_3L | 1333689..1334457 | 17..785 | 100 | | Minus |
