UFO04886.5prime Sequence
1117 bp (1007 high quality bases) assembled on 2009-06-30
> UFO04886.5prime
CAGTCGACATGCCCGTGAAGAATGGCGAATCCGATGGCGAAGGCGACGTT
TCTGGCGGAGAATCGGAGCACTCGAATTCCAGCCAGCCACACGACACCTC
CGACGAGGAGGAGGCCAACGAATGCGATTCGGATGACTCCTCCGAGTTGG
ATGCCAGTGAAATAGACCGCCGGCGGGCAGAGCACATCGAGGATTTGCTG
AGCTTGGAGCGCCAATTTAACGAGTTGCGGGAACAGTACTACGTCGAGCG
CATCAATCTCATCGAACGACAATTGGCCGAGGTGCGTTCCGGGCGTTCCG
AGGAGTTTGTCCAGCCGCAAAAGGAACTGGACAAGAAGTATCGCACCAGG
ATCGAGGTGGCGGACGTCCTGCGCAAGTACCGACTGCAGAATATCGAGCA
CAAATACCAGTCCGAGGAACAAGCTGCCGTCCAGCACTTTGAGAGCGAGA
AACACATGGCATTGGACAATCTGCGCGAGGAGTTCATGGAGCGCATCCGT
CGCCTGGAGGAGGATCGCCACAACGTGGACATCTCGTGGGCCGACTGGGG
CACCGACAAGCGGCAGAGCAAGGTGCGCGGACCGGGTCGCAAGAAGGCCG
TCACCGTCACGGGTCCCTATGTCGTGTACATGCTGCGCGAGGAGGATATC
ATGGAGGACTGGACGATTATACGCAAGGCCCTCAAGCGATCCTCCTCGTC
GGCCACCGCTGCTGGCACAGTTACGCCCACTTCCGGCGTAAGCGTTAGCC
TGTCCGGTTTGCCAGCAATGGCAGGAGCTAGCGGAGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATTTATCACAGGAGTCCA
GCGAGCTCGATTTCAAATTACGCCCCGCCTGCCACTCATTCGCAGTTATT
GTTTTTTATTCATTAGCATTCTTGCGACTTGAGCCAATTCAAACGCATGT
ATTGACTTGATCGGCAC
UFO04886.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brms1-RA | 1323 | CG4400-RA | 186..962 | 9..785 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12908347..12908690 | 785..442 | 1720 | 100 | Minus |
| X | 23542271 | X | 12908936..12909180 | 443..199 | 1225 | 100 | Minus |
| X | 23542271 | X | 12909248..12909437 | 198..9 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:03 has no hits.
UFO04886.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:28 Download gff for
UFO04886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4400-RA | 153..945 | 1..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:03 Download gff for
UFO04886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4400-RA | 177..969 | 1..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:14 Download gff for
UFO04886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brms1-RA | 177..969 | 1..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:14 Download gff for
UFO04886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12908340..12908688 | 444..794 | 98 | <- | Minus |
| X | 12908936..12909180 | 199..443 | 100 | <- | Minus |
| X | 12909248..12909446 | 1..198 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:03 Download gff for
UFO04886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12802373..12802721 | 444..794 | 98 | <- | Minus |
| arm_X | 12802969..12803213 | 199..443 | 100 | <- | Minus |
| arm_X | 12803281..12803479 | 1..198 | 98 | | Minus |
