UFO04887.5prime Sequence
1141 bp (1026 high quality bases) assembled on 2009-06-30
> UFO04887.5prime
CAGTCGACATGAGCCTGCCCAGCGCCAGCAACCACGCACATGCTGCATCG
CCCGTCTACAGCAACAGCAATAACAACAAGTCGAGCGCGAGCAGCAAAAA
GACCTCCTCCAAAAACGATTTGCTACGCTGCGCCGTGGGACTCCTGCTGA
AGCAGAAAAACTACGTGAGCAACGAACGATTTCGGCGGTCGGATTTTTTG
CTGCTGCAAAACAAACAGCAGTTTGCTGTCAACAAAATGCTGGATACGGA
TTTGCACGGTGGCAATAGCTTCACCTTTTCAAATGTCCAGGTTATCACCA
ACAACCAGCACACTGTGGACCAGCAATTTGGTCGGTTTTCGCAGTTCGTG
GAGGCCCAGGCCGAACCGCTGCGTCTGGAAATGAAGCGCTTTTATGGACC
CATGCTGTGCCACTTCTATCTGGATCTGCTCAAGGCTCGCGAACCGCGTG
GCGCTGTGGAGTTGTTGCGCAAATATGCTCACTTGGTGGCCCCCGTGGAT
ATGTACGATGCACCACCACCTACCAAGATCAACGGATGCTCCACTACGGC
CAATGAGTCCACTTTTAACATACGCTTCGCAAAGGAAGCCCAGGACACTG
GGGACACGGAACTGGACTACTTTATGCGCCTGGTGCAAACCCTGAGTGGC
TACACACGGCTGGAGGCAGCAGAGTCCGATGACACAGTGGCCCATTTTCG
ATCTTCGAAATACGAACTACATACTACAGCCGTAGTTGTTAATAGGATAT
GCGCTTATCTCCAACGACGGGGCCACGTTTTAATTATGAACCTACTCTAC
ACCTGGTTGCATGTCCATATAGTGGAGAATGAGCAGCGCGCCTTTAGTGA
GGATCACCTGCTTGGCTTGACGGATGACCTGAAGTGAGGATGGAGAGGAC
GATGTTGTTTCCAAACCAGCAGTAACCCTTAATACCCGCGGAGAAATAGA
CCAGCAAATCCCTCACTGAAAGTCGAACCGAAACGACCCGCTGAGAGCCA
AACATTATGCTAGAAACAGACATCAAACAGGAGGTAAACGGATGAATCTG
CGAGCTTAGTAAATTACACTGATTGACGCCCTGCTTGGACACCTTAAATC
GCCCTGAACGATCTCAGGTTCAGGTGAATTGCCGAATTCGG
UFO04887.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wda-RA | 2744 | CG4448-RA | 89..1234 | 9..1134 | 5155 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23256870..23257781 | 1068..167 | 4100 | 98.7 | Minus |
| 3R | 32079331 | 3R | 23257841..23257999 | 167..9 | 795 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3244..3320 | 3..79 | 141 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6925 | 20..106 | 132 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2427 | 20..104 | 130 | 65.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1047..1156 | 7..118 | 130 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2387 | 59..118 | 120 | 66.7 | Plus |
UFO04887.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:29 Download gff for
UFO04887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wda-RA | 50..1184 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:52 Download gff for
UFO04887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wda-RA | 80..1214 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:17 Download gff for
UFO04887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wda-RA | 80..1214 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:17 Download gff for
UFO04887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23257841..23258004 | 1..167 | 97 | | Minus |
| 3R | 23256814..23257780 | 168..1116 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:52 Download gff for
UFO04887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19082536..19083502 | 168..1116 | 97 | <- | Minus |
| arm_3R | 19083563..19083726 | 1..167 | 97 | | Minus |
