UFO04893.5prime Sequence
1144 bp (1035 high quality bases) assembled on 2009-06-30
> UFO04893.5prime
CAGTCGACATGTCAGATTCGACTATTTTCCGTTTTAACTCATCCATTCTT
GATCAGTCAGCGGACAGCAACGTATCCAGTTCGAGCTCCAATTCCAGTGT
ATCCGACTCTTCTGTGGACTCCCATTCATCCATAGAATCCAATTCGGGAC
ACAATACATCCGTGGAATCTCAGTCATCCGCGGAATCTGATTCATCCGCT
GATTCCCATTCGTCCTTGGAACGCCCATCCCCAGTGGAGCGTGATTTATC
TGTGGAATCAGACTCATCTTCAGCCACCAATACCAGCGAATCTTCAGTCG
GAGAAGCTTCAAACCAACTGCAGTCACCGCAAAGCAATAACCCCTTAAAT
ATGGCTAACTTGTCTGTCTCGACTGAAGATGCTCATTCGCAGATCAGATC
ACTTACCCAGGATGTGATCCAGATGGAAGCAGAGTTGGATCGCATGAATC
GCTACTGCGAGGAAGTTGTGGCACAGATTGACACCTTCGCCACGAGAACC
TCAACGCCAACAACTCGTAGAATTCGCCGCAGAACGAGTCCAGTAGAAGT
GATAGATCTGTCCCATTTGGACCGTGCACCACCTGTTCGATCCGCTCGGA
ATCGTGATCCCGATGCTTTCATCGATCTATGCACCCCCGAAGGCCCAAGA
AGTCGCACAGTGAATCTTCACTCCAACGACTCCCTCACCATTCTGCCACG
TCGGTCAGCCGAAAATGACCCGGTAGTGGATCTCGACGTTGCGTCGCCAC
CAAAACGCGTTAATCGCGACATTGATGAGTCCCAAAAAGAGGAGTTATAC
AAGTGCCCCATCTGCATGGACAGTGTATCGAAGCGCGAGCCAGTGTCAAC
CAAATGTGGACACGTCTTCTGCCGCGAATGCATCGAAACAGCCATCAGAG
CTACGCACAAGTGCCCAATATGCAACAAGAAGCTGACCGCACGTCAATTC
TTTCGCATTTACTTGGCAAGCTTTCTAGACCATTCGTTTGGGGGCGGGGG
GCCAGGTAAGTGGTCATAATCATATCATAATCATAATCATAATCACCACT
AGGCCTAGGAGATCCTGGTCATGACATATGCCTGGATCCACAATAAAACG
CCCGGCGCGCACCGAACGTCGGACATCCGATGGAGGTCTGAAGT
UFO04893.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgrn-RA | 1632 | CG10981-RA | 335..1291 | 9..965 | 4785 | 100 | Plus |
| dgrn-RD | 1635 | CG10981-RD | 335..1294 | 9..965 | 4745 | 99.7 | Plus |
| dgrn-RB | 1611 | CG10981-RB | 362..1270 | 57..965 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5825805..5826235 | 535..965 | 2155 | 100 | Plus |
| 3R | 32079331 | 3R | 5825036..5825444 | 36..444 | 2045 | 100 | Plus |
| 3R | 32079331 | 3R | 5825499..5825588 | 445..534 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:45 has no hits.
UFO04893.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:31 Download gff for
UFO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10981-RA | 337..1310 | 1..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:06 Download gff for
UFO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgrn-RA | 337..1310 | 1..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:08 Download gff for
UFO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgrn-RA | 327..1300 | 1..976 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:08 Download gff for
UFO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5825036..5825444 | 36..444 | 100 | -> | Plus |
| 3R | 5825499..5825588 | 445..534 | 100 | -> | Plus |
| 3R | 5825805..5826235 | 535..965 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:06 Download gff for
UFO04893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1650758..1651166 | 36..444 | 100 | -> | Plus |
| arm_3R | 1651221..1651310 | 445..534 | 100 | -> | Plus |
| arm_3R | 1651527..1651957 | 535..965 | 100 | == | Plus |
