UFO04894.5prime Sequence
1128 bp (1005 high quality bases) assembled on 2009-06-30
> UFO04894.5prime
CAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCGGCTCGGAT
CCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAACTCGAGGC
CAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCACCCGTGCCC
GCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACGTGCCCATT
CCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTCCGCGAGCT
GGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGAGCGCAAGA
TCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGCAGAAGCGT
CCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTTGAGGATCT
GGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAAGCTCGACG
GCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGACCACCATT
GAACACAAAGTAAGCATAAGCATCCTCCACCTCAAAGAAGAGTGCATCGT
GTGTGTTAGCAGGCGCGTACCCTCGATATTTGGGCCTTCCGTGCCATGGA
GCTCAATCTTCGCCAGGGGACGCAGAACAGTCAGGGCCAATTACTCGTTA
TTGCAGGCATTAGAAGCCATTGCGGTCCTGCATCTCCAAATATTGGCCAC
AGTTGGTCTTTTAATACATCGTTCTTGTGTTTTTCGCTGGCTGTCCTTCC
AAAGCCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATTTATCAACAGGAGTCCAAGCGGGCTCGATTATCAAATTACGCC
CCGCCCTGCACTCATCGCAGTACTGTTGTAATTCATTAAGCAATTCTGCG
ACATGAGCCATCACAACGGCATGATGACTGATCGCAGCGGCATCGACCTG
TGCCTTGCTAATATTGGCCATGGTGAAA
UFO04894.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS7-RE | 813 | CG1883-RE | 38..540 | 9..511 | 2500 | 99.8 | Plus |
| RpS7-RC | 978 | CG1883-RC | 286..788 | 9..511 | 2500 | 99.8 | Plus |
| RpS7-RA | 725 | CG1883-RA | 33..535 | 9..511 | 2500 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30207844..30208427 | 758..175 | 2890 | 99.7 | Minus |
| 3R | 32079331 | 3R | 30208489..30208657 | 177..9 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:33 has no hits.
UFO04894.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:26 Download gff for
UFO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS7-RB | 16..779 | 2..761 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:46 Download gff for
UFO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS7-RA | 22..535 | 2..511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:14 Download gff for
UFO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS7-RA | 22..535 | 2..511 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:14 Download gff for
UFO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30207844..30208425 | 177..758 | 99 | <- | Minus |
| 3R | 30208490..30208665 | 1..176 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:46 Download gff for
UFO04894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26033566..26034147 | 177..758 | 99 | <- | Minus |
| arm_3R | 26034212..26034387 | 1..176 | 97 | | Minus |
