UFO04895.5prime Sequence
1086 bp (972 high quality bases) assembled on 2009-06-30
> UFO04895.5prime
CAGTCGACATGTCCGCGACCGCCTCAAATCGCCAGCCGGTGCCAAAATTT
CCGGCCGCCATGCCGCGTGGAACGGGCACAGTGTGCTCCAATCCGGCGGT
GCCCAAGTCGCCGGATGCCCTCACCTCCCTGGTGGCCCGGAAGAGCATTA
CGTCCATGTCGGAGGAGGAGATCATTCAGGAGAATCTCAACGAGATCCTC
GACCTCAAGTCGCGCGAGGAGCGAAAAGCCAATGGACGTCTGGTGGCTGT
GATCGTCTGTTTTCTGGTGCTCTTCCTGGCTGTCTACCATGCCTGCGTCC
GGAAGTCGGAGAACTCGCTGGCTGGCGTCCTGGTACCGGCGGGCATCATG
CTCTCCTACGGCGCCTGGGTGGTCGTCCTGGCCAAGAGGGACAAGCACAG
GCGTGCCATGTTTGAGCGGCACATCGAGGAGGTGACGCTAAAGAACAAAA
TCGAGCTGGAGGAGAAGCATGCGCGCCACGCGAAGAAGGCGCAATCGCAT
CATGGTCACTCCGGCACCGATTCCACGGGCAGTGCCTCCAGTTCGCTGCA
CTACGTCAACGAGCTGCTGCCCAACGGTGGCGGTGAGCACCGCAAGAAGC
AGCGACGCCATCGTCACAAGGAGCGCTCCGTGGAGCGAGATGATCATCAT
CAACGTAGCCATCAGCGCTCGCATACGCCGGACATTGGCGTGCATCGTGG
AGCGCCCAAGAGGCCCAGTTTCCGGCAGAAGCTCTTCGGTCAGACCATCG
CCCATGTCAAACTGGTGGAGGCGCAGAGCGATAGCACGGATTCAGCTGGC
GCATCTGGTCCGGGTACGAGATCAGGTCGCAGTACGGTCGCCAGTCCAGG
TGGCCAGGCCAGTGCTGCGGCCAAGCTCAATCCCGGCGAGAAACGACAGC
GACTACAGCGCCTGGACACGTTGCCACTGGCGCAGGTGGTGCGTGTCAGC
TCGATTCCGGCAAGCTTTCTAGAACATTCGTTTGGCGCGCGGGCCAAGGT
AGTGGTCATATCATATCATATCATAATCATATCACACCTAGCCTAGGAGA
TCCTGGTCATGACTATGCTGATTCTCCACAATAAAA
UFO04895.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32599-RA | 1233 | CG32599-RA | 143..1094 | 8..959 | 4730 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14245830..14246375 | 414..959 | 2730 | 100 | Plus |
| X | 23542271 | X | 14243828..14244036 | 8..216 | 1045 | 100 | Plus |
| X | 23542271 | X | 14245618..14245765 | 267..414 | 710 | 98.6 | Plus |
| X | 23542271 | X | 14245248..14245299 | 216..267 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:29 has no hits.
UFO04895.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:32:27 Download gff for
UFO04895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32599-RA | 1..954 | 9..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:58 Download gff for
UFO04895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32599-RA | 137..1094 | 1..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:01 Download gff for
UFO04895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32599-RA | 137..1094 | 1..959 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:01 Download gff for
UFO04895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14243822..14244035 | 1..215 | 98 | -> | Plus |
| X | 14245248..14245299 | 216..267 | 100 | -> | Plus |
| X | 14245619..14245764 | 268..413 | 98 | -> | Plus |
| X | 14245830..14246375 | 414..959 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:58 Download gff for
UFO04895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14137855..14138068 | 1..215 | 98 | -> | Plus |
| arm_X | 14139281..14139332 | 216..267 | 100 | -> | Plus |
| arm_X | 14139652..14139797 | 268..413 | 98 | -> | Plus |
| arm_X | 14139863..14140408 | 414..959 | 100 | | Plus |
