UFO04901.5prime Sequence
1018 bp (993 high quality bases) assembled on 2009-06-30
> UFO04901.5prime
CAGTCGACATGGATCCCAGTGCTCTACAAAACATGGATCGGGACGCATTA
AAGAAGCAAATCGAGAATATGAAATATCAGGCCTCCATGGAGCGCTGGCC
GTTATCTAAATCCATAGCAGAAATGCGCTCGTTCATCGAGGAGAACGAGA
AAAATGATCCGTTGATCAATGCGCCGGATAAGAAGAACAATCCATGGGCC
GAAAAGGGCAAATGCGTTATTATGGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATC
AAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCT
CAATAAACCCTTTAGGGAAATAGGCCCAGGTTTTCACCGTAACACGCCAC
ATCTTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCA
CTCCAGAGCCGATGAAAACGTTTTCAGTTTGCTCATGGAAAACGGTGTAA
CAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTTCATTGCCCT
AGAAATTCCGGATGAGCATTCATCAGGCGGGCCAGAATGTGATAAAGGCG
GATAAACTTGTGCTTATTTTTCTTTACGGTTCTTTAAAAGGGCCGTATAA
TCCAGCTGAACGGCTCTT
UFO04901.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ggamma30A-RJ | 2995 | CG3694-RJ | 673..889 | 8..224 | 1085 | 100 | Plus |
| Ggamma30A-RH | 4742 | CG3694-RH | 163..379 | 8..224 | 1085 | 100 | Plus |
| Ggamma30A-RG | 1470 | CG3694-RG | 614..830 | 8..224 | 1085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9272494..9272607 | 8..121 | 570 | 100 | Plus |
| 2L | 23513712 | 2L | 9291056..9291158 | 122..224 | 515 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..289 | 795..854 | 123 | 71.7 | Plus |
UFO04901.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:34:40 Download gff for
UFO04901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ggamma30A-RC | 668..898 | 1..232 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:54 Download gff for
UFO04901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ggamma30A-RG | 607..837 | 1..232 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:13 Download gff for
UFO04901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ggamma30A-RG | 607..837 | 1..232 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:13 Download gff for
UFO04901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9272487..9272607 | 1..121 | 97 | -> | Plus |
| 2L | 9291056..9291158 | 122..224 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:54 Download gff for
UFO04901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9272487..9272607 | 1..121 | 97 | -> | Plus |
| arm_2L | 9291056..9291158 | 122..224 | 100 | == | Plus |
